BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915810
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1190 0.0
> AT5G44150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures;
EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:17763681-17765420
REVERSE LENGTH=1320
Length=1320
Score = 1190 bits (644), Expect = 0.0
Identities = 774/838 (92%), Gaps = 4/838 (0%)
Strand=Plus/Plus
Query 1 ATGGACTCAAAATCTTTAGCTAAATCGAAGAGAGCTCATACTCAACACCACAGTAAGAAA 60
||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 137 ATGGACTCAAAATCTCTAGCTAAATCGAAGAGAGCTCATACTCTACACCACAGCAAGAAA 196
Query 61 TCGCATTCGGTTCATAAGCCGAAAGGTCCGGGAGTTTCAGATAAGAATCCGGAGAAGCTG 120
|||||||| |||||||| ||||||| ||| ||||| ||||| |||||||||||||||||
Sbjct 197 TCGCATTCTGTTCATAAACCGAAAGTTCCTGGAGTCTCAGAGAAGAATCCGGAGAAGCTA 256
Query 121 CAAGGGACCCAAACCAAGAGTCCGGTTCAATCTCGACGAGTCTCTGCACTCCCGTCGAAT 180
||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 257 CAAGGAAACCAAACCAAGAGTCCGGTTCAATCTCGACGAGTCTCTGCACTTCCGTCGAAT 316
Query 181 TGGGATCGGTATGATGATGAACTTGATGCAGCTGAGGATCCGTCGATAAGCCAACCGTCG 240
||||||||||||||||||||||||||||||||||||||| | |||||||||| || ||
Sbjct 317 TGGGATCGGTATGATGATGAACTTGATGCAGCTGAGGATTCATCGATAAGCCTACATTCT 376
Query 241 GATGTTATTCTGCCGAAAAGCAAAGGAGCGGATTATCTGCATTTGATATCTGAAGCTCAA 300
||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 377 GATGTTATTGTGCCAAAAAGCAAAGGAGCAGATTATCTGCATTTGATATCTGAAGCTCAA 436
Query 301 GCTGAGTCTCATTCAAAGATTGAAAACAATTTAGATTGTCTATCTTCGTTAGACGATCTT 360
||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||
Sbjct 437 GCTGAGTCTAATTCAAAGATTGAGAACAATTTAGATTGTTTATCGTCGTTAGACGATCTT 496
Query 361 TTGCACGATGAGTTTAGTCGCGTAGTTGGATCTATGATCTCGGCCAGAGGGGAAGGTATA 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 497 TTGCACGATGAGTTTAGTCGCGTAGTTGGATCTATGATCTCGGCTAGAGGGGAAGGTATA 556
Query 421 CTTTCATGGATGGAAGATGACAACTTTGTTGTGGAGGAAGATGGATCAGCTTCATATCAA 480
|||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||
Sbjct 557 CTTTCATGGATGGAAGATGATAACTTCGTTGTGGAAGAAGATGGATCAGGTTCATATCAA 616
Query 481 GAGCCTGGATTCCTCTCCTTGAATTTGAATGCTCTGGCAAAGACGCTAGAGAAAGTGGAT 540
|||||||||||||||||||| |||||||||| | ||||||||||||||||||| |||||
Sbjct 617 GAGCCTGGATTCCTCTCCTTAAATTTGAATGTTTTGGCAAAGACGCTAGAGAATGTGGAC 676
Query 541 TTGCACGAGCGACTCTACATTGAACCTGATCTTTTGCCACTGCCCGAGCTGTGTACATCC 600
||||| ||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 677 TTGCATGAGCGACTCTACATTGATCCTGATCTTTTGCCGCTGCCCGAGCTGAATACATCC 736
Query 601 CAAACAAAAGTTAGCCGCAATGAAGAACCGAGTCATTCACACACAGCTGAGAACGACCC- 659
||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 737 CAAACAAAAGTTAGCCGCAATGAAGAACCGAGTCATTCACACATAGCTCAAAACGACCCT 796
Query 660 AGTTGTCGTACCAGGAGAATCATTAGTC-GTGGAAGCTGTGTCTCTGGATCAAGTCAATG 718
| ||||||||||||||||||||| |||| | |||||||| ||| ||||||||||| || |
Sbjct 797 A-TTGTCGTACCAGGAGAATCATCAGTCAG-GGAAGCTGAGTCGCTGGATCAAGTTAAGG 854
Query 719 ATATACCAATACTCACAGACGAGTCAGAGAAATCTTCAGCGATTGAAACTGATCTAGATT 778
| |||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 855 ACATACTAATACTCACAGACGAGTCAGAGAAATCTTCAGCAATTGAAGCTGATCTAGATT 914
Query 779 TGCTCCTCAACTCCTTTAATGAATCACATACTCAGCTTAACCCAGTGGCCAGTTCCTC 836
||||||| |||||||||| |||| ||||||| |||| ||||||||||||||| ||||
Sbjct 915 TGCTCCTTAACTCCTTTAGTGAAGCACATACACAGCCAAACCCAGTGGCCAGTGCCTC 972
Score = 248 bits (134), Expect = 8e-65
Identities = 169/186 (91%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 868 AAATCTTCAGCTTTTGAAACTGAGCTTGATTCTCTTCTCAACTCTCATAGTAGCGCAGAA 927
|||||||||||||||||||| || ||||||||||||||||| |||||||||||| |||||
Sbjct 977 AAATCTTCAGCTTTTGAAACGGAACTTGATTCTCTTCTCAAATCTCATAGTAGCACAGAA 1036
Query 928 CCATACAACAAACCAGCAAACCCATCTGATCAAAAGATTCACACGACGGGTTTTAATGAT 987
| || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1037 CAATTCAACAAACCAGGGAACCCATCTGATCAAAAGATTCACATGACGGGTTTTAATGAT 1096
Query 988 GTGCTTGATGATTTGCTCGAAAGTTCTTCAGTGTCGATCAAACCAAAG-CAGACCCAGAC 1046
|||||||||||||||||||||||| || |||| ||||||| |||| || | || ||||||
Sbjct 1097 GTGCTTGATGATTTGCTCGAAAGTACTCCAGTATCGATCATACCACAGTC-GAACCAGAC 1155
Query 1047 CTCATC 1052
||||||
Sbjct 1156 CTCATC 1161
Score = 86.1 bits (46), Expect = 7e-16
Identities = 46/46 (100%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1071 ATCCAAAGTTTTAGATGATTTTGATTCTTGGTTAGACACGATTTGA 1116
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 ATCCAAAGTTTTAGATGATTTTGATTCTTGGTTAGACACGATTTGA 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5