BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915837 Length=393 Score E Sequences producing significant alignments: (Bits) Value AT5G14460.1 | Symbols: | Pseudouridine synthase family protein... 152 2e-36 > AT5G14460.1 | Symbols: | Pseudouridine synthase family protein | chr5:4660059-4662668 REVERSE LENGTH=1928 Length=1928 Score = 152 bits (82), Expect = 2e-36 Identities = 100/108 (93%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 141 GAGAATGGTGTGGCTA---GTGGTGGTGATGGAGAACCTTTTCTTGTTACAAGAAACGGT 197 ||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 996 GAGAAAGGTATGGCTAGTGGTGGTGGTGATGGAGAACCTTTTCTTGTTACGAGAAACGGT 1055 Query 198 GAACTTCCTCCTAGATGGGGTGGTCCTAACGGTACAATGCTTTTGGTG 245 ||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 1056 GAACTTCCTCCTAGATGGGATGGTCCTAACGGTACAGTGCTTTTGGTG 1103 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18548799381 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5