BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915837

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G14460.1 | Symbols:  | Pseudouridine synthase family protein...   152    2e-36


> AT5G14460.1 | Symbols:  | Pseudouridine synthase family protein 
| chr5:4660059-4662668 REVERSE LENGTH=1928
Length=1928

 Score =  152 bits (82),  Expect = 2e-36
 Identities = 100/108 (93%), Gaps = 3/108 (3%)
 Strand=Plus/Plus

Query  141   GAGAATGGTGTGGCTA---GTGGTGGTGATGGAGAACCTTTTCTTGTTACAAGAAACGGT  197
             ||||| ||| ||||||   ||||||||||||||||||||||||||||||| |||||||||
Sbjct  996   GAGAAAGGTATGGCTAGTGGTGGTGGTGATGGAGAACCTTTTCTTGTTACGAGAAACGGT  1055

Query  198   GAACTTCCTCCTAGATGGGGTGGTCCTAACGGTACAATGCTTTTGGTG  245
             ||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct  1056  GAACTTCCTCCTAGATGGGATGGTCCTAACGGTACAGTGCTTTTGGTG  1103



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5