BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915861
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43720.1 | Symbols: | Protein of unknown function (DUF2361)... 872 0.0
AT1G04230.1 | Symbols: | Protein of unknown function (DUF2361)... 363 2e-99
> AT5G43720.1 | Symbols: | Protein of unknown function (DUF2361)
| chr5:17557166-17559354 REVERSE LENGTH=1371
Length=1371
Score = 872 bits (472), Expect = 0.0
Identities = 666/753 (88%), Gaps = 39/753 (5%)
Strand=Plus/Plus
Query 1 ATGGCGCACGGAGGTTATGCCAAGAGAAGAGTTTCGGAACCTAATCAGGCGGCGGGAAGT 60
|||||||||||||| |||||||||||||| | ||||||||| || ||| ||||||||||
Sbjct 117 ATGGCGCACGGAGGCTATGCCAAGAGAAGGGATTCGGAACCAAAACAGACGGCGGGAAGC 176
Query 61 AGTCGGAGGTCGAAAGTATTGCGTGTAGAGAAGAAACCTAAGACTGTCTCCATCAAGAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGTCGGAGGTCGAAAGTATTGCGTGTAGAGAAGAAACCTAAGACTGTCTCCATCAAGAAT 236
Query 121 CAGATGCGTTCCGTTGAACGCTTTCTTCGTAAAGTCAGCTCCTTTTCTCTCTCTGAAATT 180
||||||||||| |||||||||||||||||||||| | ||| | ||| ||||| |
Sbjct 237 CAGATGCGTTCTGTTGAACGCTTTCTTCGTAAAG--A-----TTTGC-CTC-CTGAAGTA 287
Query 181 AG-G-GTTCCT-TTGATAGA-ATCTCTCTTAA-AGTTCCAGCCTTTCTGGCGATTTGCTC 235
|| | | | || | | |||| | | | || | || || | || | ||||
Sbjct 288 AGAGAG-T-CTCTAG-TAGAGAAGT-T-GGAAGATTTGAAG--AAGC-AGCAAGACGCTC 339
Query 236 ATACCCGTCTTGCTGTTGAACGTAAAATATTCCTTAGGAACAGAAAGATTAAGTTCTTT- 294
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 340 ATGCCCGTCTTGCTGTTGAACGTAAAATATTCTTTAGGAACAGAAAGATTAAGTTCTTTG 399
Query 295 --CGGAGAAAGATCGAAAGAAGCATTAGACGTCTTGAGAAGTTACAACGTACTTCATCTG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 AGCGGAGAAAGATCGAAAGAAGCATTAGACGTCTTGAGAAGTTACAACGTACTTCATCTG 459
Query 353 CTCATGTGGGAGATACAGATATAGCTGAGCAACTTAGTAAACTCAAAGAAGACCTTGAAT 412
|||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 460 CTCATGTGGGAGATGTAGATATAGCTGAGCAACTCAGTAAACTCAAAGAAGATCTTGAAT 519
Query 413 ATGTTAGGGTACTTCCCGAAAAACGAGAG-TATGTATCTCTTTTTACTGGAGCTGAGGAT 471
||||| || | |||||||||||| |||| |||||||| |||||||||||||||||||||
Sbjct 520 ATGTTCGGTT-CTTCCCGAAAAATGAGAAATATGTATCACTTTTTACTGGAGCTGAGGAT 578
Query 472 TCAGAGGTAATTGAGAAGAGAGGTAAAATGCGGAAGCAGATCAAAGCCAATATTATTGTT 531
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 579 TCAGAAGTAATTGAGAAGAGAGGTAAAATGCGGCAGCAGATCAAAGCCAATATTATTGTT 638
Query 532 GCTGCTGCTAGTGGGAAAGAGTTAGAA-ACACGG--AGTGAAGACGATGGTCTTCTGGAT 588
||||||||||||||||| ||||||||| | |||| |||||||| ||||||||||||||
Sbjct 639 GCTGCTGCTAGTGGGAAGGAGTTAGAAGAGACGGGGAGTGAAGATGATGGTCTTCTGGA- 697
Query 589 CTGGACCTTAGTGATGATGATTTCTTTGATAAAGGGAGTTCAAGCGATGAAGCAGATGCA 648
| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 698 C----C-TTAGTGATGATGATTTCTTTGATAAAGGGAGTTCAAGCGATGAAGCAGACGCA 752
Query 649 GATGATGAATTGACCGATAAAAGCGCA--G-AGGCTGCTTCTAGTGCTTCTGGTAGAGCA 705
|||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 753 GATGATGAATTGACTGATAAAAGCGCAAAGGAGGCTGCTTCTAGTGCTTCTGGTAGAGCA 812
Query 706 ACTTCTGGCGTGTCTAGTTATGAAAGGAATCAG 738
||||||||| |||||||| ||||| ||||||||
Sbjct 813 ACTTCTGGCATGTCTAGTGATGAACGGAATCAG 845
> AT1G04230.1 | Symbols: | Protein of unknown function (DUF2361)
| chr1:1125518-1128168 FORWARD LENGTH=1376
Length=1376
Score = 363 bits (196), Expect = 2e-99
Identities = 414/516 (80%), Gaps = 28/516 (5%)
Strand=Plus/Plus
Query 240 CCGTCTTGCTGTTGAACGTAAAATATTCCTTAGGAACAGAAAGATTAAG-TTCTT---TC 295
|||||||||| ||||||||||||| ||||| |||||||||||| | || ||||| |
Sbjct 286 CCGTCTTGCTTTTGAACGTAAAATCTTCCTAAGGAACAGAAAG-GTCAGATTCTTCGAGC 344
Query 296 GGAGAAAGATCGAAAGAAGCATTAGACGTCTTGAGAAGTTACAACGTACTTCATC---TG 352
|||||||||| ||||| || || |||||||| |||||| |||| || | | |||| ||
Sbjct 345 GGAGAAAGATTGAAAGGAGTATAAGACGTCTCGAGAAGCTACATCGGAGTACATCTGGTG 404
Query 353 CTCATGTGGGAGATACAGATATAGCTGAGCAACTTAGTAAACTCAAAGAAGACCTTGAAT 412
| ||||| |||| |||| |||| || |||||| | || ||||||||||||||||||||
Sbjct 405 GTTATGTGCAAGATGCAGAAATAGGTGGGCAACTCAATAGACTCAAAGAAGACCTTGAAT 464
Query 413 ATGTTAGGGTACTTCCCGAAAAACGAGA-GTATGTATCTCTTTTTACTGGAGCTGAGGAT 471
|||||||| | |||||| || || |||| ||||||||| || |||| |||| |||| |||
Sbjct 465 ATGTTAGGTT-CTTCCCCAAGAATGAGAAGTATGTATCGCTATTTAGTGGATCTGATGAT 523
Query 472 TCAGAGGTAAT-TGAGAAGAGAGGTAAAATGCGGAAGCAGATCAAAGCCAATATTATTGT 530
| | | ||| | |||| |||| ||||| |||||||||| ||||||||||| || ||| |
Sbjct 524 TTACAAGTA-TCTGAGCGGAGAAGTAAATTGCGGAAGCAAATCAAAGCCAACATAATTTT 582
Query 531 TGCTGCTGCTAGTGGGAAAGAGTTAGAA-ACAC-GG-AGTGAAGACGATGGTCTTCTGGA 587
||||||||| |||||||||||||| ||| | || || || ||||| |||| |||| |
Sbjct 583 TGCTGCTGCCAGTGGGAAAGAGTTGGAAGAGACAGGGAGCGAAGATGATGCTCTT-T--- 638
Query 588 TCTGGACCTTAGTGATGATGATTTCTTTGATAAAGGGA-GTTCAAGCGATGAAGCAGATG 646
| |||||| ||||| ||||| ||||||| | || ||| ||||||| || ||||||||||
Sbjct 639 T--GGACCTGAGTGACGATGACTTCTTTG-TCAACGGAAGTTCAAGTGACGAAGCAGATG 695
Query 647 CAGATGATGAATTGACCGATAAAAGCGCAGA-G-GCTGCTT-CTAGTGCTTCTGGTAGAG 703
| |||||||| | ||| ||||||||| || | | || | || ||||||||||||||||||
Sbjct 696 CGGATGATGAGTGGACTGATAAAAGCACAAAAGAGCCGGTTTCTAGTGCTTCTGGTAGAG 755
Query 704 CAACTTCTG-GCGTGTCTAGTTATGAAAGGAATCAG 738
|||| || | || |||| ||| | ||||| ||||||
Sbjct 756 CAACATC-GAGCATGTCCAGTGACGAAAGAAATCAG 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35816946811
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5