BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915880

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49840.1 | Symbols:  | ATP-dependent Clp protease | chr5:202...   233    5e-61


> AT5G49840.1 | Symbols:  | ATP-dependent Clp protease | chr5:20255191-20259300 
FORWARD LENGTH=2144
Length=2144

 Score =  233 bits (126),  Expect = 5e-61
 Identities = 132/135 (98%), Gaps = 0/135 (0%)
 Strand=Plus/Plus

Query  79    GAAGAAGCTCAAAGGGGAATTGTGTACATTGATGAAGTTGATAAGATGACTATGAAGTCT  138
             |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1022  GAAGAAGCTCAAAGGGGAATTGTGTACATTGATGAAGTTGATAAAATGACTATGAAGTCT  1081

Query  139   CATAGCTCAAATGGTGGTAGAGATGTCTCTGGAGAAGGTGTCCAACAGTCATTGATAAAA  198
             ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct  1082  CATAGCTCAAATGGTGGTAGAGATGTCTCTGGAGAAGGTGTTCAACAGTCATTGCTAAAA  1141

Query  199   TTGCTGGAAGGAACT  213
             |||||||||||||||
Sbjct  1142  TTGCTGGAAGGAACT  1156



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5