BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915884

Length=780
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43550.1 | Symbols:  | F-box associated ubiquitination effec...   412    2e-114
  AT5G22792.1 | Symbols:  | pseudogene of F-box family protein | ...   110    3e-23 


> AT5G43550.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr5:17497892-17498263 FORWARD LENGTH=372
Length=372

 Score =  412 bits (223),  Expect = 2e-114
 Identities = 310/352 (88%), Gaps = 6/352 (2%)
 Strand=Plus/Plus

Query  172  GACGTCCATAGAAAATATGTCAAACAACAGGAGCATCTAGTTTTATCACTAACATCACAG  231
            |||| ||||||| |||| || | | |||| |||||||| |||||||||||||||||||| 
Sbjct  22   GACGGCCATAGACAATACGTTATAGAACAAGAGCATCTGGTTTTATCACTAACATCACA-  80

Query  232  TTTA-CGGGGTGGAGAAAGATCGAGATCACGGGAGATCCTTACGCCTATTTAGAAGGCGG  290
             | | ||  ||||||||||||||||||| |||||||| ||||| |||| |||||||| ||
Sbjct  81   CTCATCGTCGTGGAGAAAGATCGAGATCTCGGGAGATGCTTACTCCTACTTAGAAGGTGG  140

Query  291  GATTTGCATCGATGGTGCTATATACTATGGAGTTGGACATACAAAGATAGCTAGATTTGA  350
            |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct  141  GATTTGCATCAATAGTGCTATATACTATGGTGTTGGACATACAAAGATAGCTAGATTTAA  200

Query  351  TCTTAGATACGAGAAGATGACGTTTATTCAAGGACCCA-AAGACTATAACGCAATCTCAT  409
            | |||||| ||||||||| | ||||||||||| | ||| | || ||||| ||||||||||
Sbjct  201  TATTAGATCCGAGAAGATAATGTTTATTCAAGCA-CCAGAGGATTATAATGCAATCTCAT  259

Query  410  GTTATTCAACACTTACAAATTATGAAGGAAAATTAGCATGTGTAAGCTATGACTCCTATT  469
            |||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct  260  GTTATTCAACCCTTACAAATTACAAAGGAAAATTAGCATGTGTAAGCTATGACTCCTATT  319

Query  470  GTGAATCTAA-TATGCGTCTATGGATTCTACAAGATGCTGAGAAACAAGAAT  520
            |||||||||| | ||||| ||||||||||||| |||| ||||||| ||||||
Sbjct  320  GTGAATCTAAGT-TGCGTGTATGGATTCTACACGATGTTGAGAAAGAAGAAT  370


> AT5G22792.1 | Symbols:  | pseudogene of F-box family protein 
| chr5:7606735-7607667 REVERSE LENGTH=609
Length=609

 Score =  110 bits (59),  Expect = 3e-23
 Identities = 119/146 (82%), Gaps = 11/146 (8%)
 Strand=Plus/Plus

Query  240  GTGGAGAAAGATCGA-GATCACGGGAGATCCTTACGCCTATTTAGAAGGCGGGATTTGCA  298
            |||||||||||| || | |||| |||||| ||||| |  || |  |||| || || ||||
Sbjct  150  GTGGAGAAAGATTGACG-TCACCGGAGATTCTTACACAGATGTCCAAGGAGGAATATGCA  208

Query  299  TCGATGGTGCTATATACTATGGAG---TTGGACATACAAAGAT-AGCTAGATTTGATCTT  354
            ||||||||||||||||||||||||   ||||||| | ||| || ||||||||||||| ||
Sbjct  209  TCGATGGTGCTATATACTATGGAGGAGTTGGACACA-AAATATTAGCTAGATTTGATGTT  267

Query  355  AGATACGAGAA-GATG-ACGTTTATT  378
            |||| |||||| | || | |||||||
Sbjct  268  AGATCCGAGAAAG-TGGA-GTTTATT  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37926780985


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5