BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg915884 Length=780 Score E Sequences producing significant alignments: (Bits) Value AT5G43550.1 | Symbols: | F-box associated ubiquitination effec... 412 2e-114 AT5G22792.1 | Symbols: | pseudogene of F-box family protein | ... 110 3e-23 > AT5G43550.1 | Symbols: | F-box associated ubiquitination effector family protein | chr5:17497892-17498263 FORWARD LENGTH=372 Length=372 Score = 412 bits (223), Expect = 2e-114 Identities = 310/352 (88%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 172 GACGTCCATAGAAAATATGTCAAACAACAGGAGCATCTAGTTTTATCACTAACATCACAG 231 |||| ||||||| |||| || | | |||| |||||||| |||||||||||||||||||| Sbjct 22 GACGGCCATAGACAATACGTTATAGAACAAGAGCATCTGGTTTTATCACTAACATCACA- 80 Query 232 TTTA-CGGGGTGGAGAAAGATCGAGATCACGGGAGATCCTTACGCCTATTTAGAAGGCGG 290 | | || ||||||||||||||||||| |||||||| ||||| |||| |||||||| || Sbjct 81 CTCATCGTCGTGGAGAAAGATCGAGATCTCGGGAGATGCTTACTCCTACTTAGAAGGTGG 140 Query 291 GATTTGCATCGATGGTGCTATATACTATGGAGTTGGACATACAAAGATAGCTAGATTTGA 350 |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 141 GATTTGCATCAATAGTGCTATATACTATGGTGTTGGACATACAAAGATAGCTAGATTTAA 200 Query 351 TCTTAGATACGAGAAGATGACGTTTATTCAAGGACCCA-AAGACTATAACGCAATCTCAT 409 | |||||| ||||||||| | ||||||||||| | ||| | || ||||| |||||||||| Sbjct 201 TATTAGATCCGAGAAGATAATGTTTATTCAAGCA-CCAGAGGATTATAATGCAATCTCAT 259 Query 410 GTTATTCAACACTTACAAATTATGAAGGAAAATTAGCATGTGTAAGCTATGACTCCTATT 469 |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 260 GTTATTCAACCCTTACAAATTACAAAGGAAAATTAGCATGTGTAAGCTATGACTCCTATT 319 Query 470 GTGAATCTAA-TATGCGTCTATGGATTCTACAAGATGCTGAGAAACAAGAAT 520 |||||||||| | ||||| ||||||||||||| |||| ||||||| |||||| Sbjct 320 GTGAATCTAAGT-TGCGTGTATGGATTCTACACGATGTTGAGAAAGAAGAAT 370 > AT5G22792.1 | Symbols: | pseudogene of F-box family protein | chr5:7606735-7607667 REVERSE LENGTH=609 Length=609 Score = 110 bits (59), Expect = 3e-23 Identities = 119/146 (82%), Gaps = 11/146 (8%) Strand=Plus/Plus Query 240 GTGGAGAAAGATCGA-GATCACGGGAGATCCTTACGCCTATTTAGAAGGCGGGATTTGCA 298 |||||||||||| || | |||| |||||| ||||| | || | |||| || || |||| Sbjct 150 GTGGAGAAAGATTGACG-TCACCGGAGATTCTTACACAGATGTCCAAGGAGGAATATGCA 208 Query 299 TCGATGGTGCTATATACTATGGAG---TTGGACATACAAAGAT-AGCTAGATTTGATCTT 354 |||||||||||||||||||||||| ||||||| | ||| || ||||||||||||| || Sbjct 209 TCGATGGTGCTATATACTATGGAGGAGTTGGACACA-AAATATTAGCTAGATTTGATGTT 267 Query 355 AGATACGAGAA-GATG-ACGTTTATT 378 |||| |||||| | || | ||||||| Sbjct 268 AGATCCGAGAAAG-TGGA-GTTTATT 291 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37926780985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5