BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915897
Length=216
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43410.1 | Symbols: | Integrase-type DNA-binding superfamil... 285 1e-76
> AT5G43410.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:17435010-17435405 REVERSE LENGTH=396
Length=396
Score = 285 bits (154), Expect = 1e-76
Identities = 197/217 (91%), Gaps = 5/217 (2%)
Strand=Plus/Plus
Query 1 ATGAGAGGCC-AGTCCGCAATTCTAAACTTCCCTCATGAGTATAACATGGGGAGTACTGG 59
|||||||||| || | ||||| || ||||||||||||||||||||||||||||| |||
Sbjct 184 ATGAGAGGCCAAG-CAGCAATCCTTAACTTCCCTCATGAGTATAACATGGGGAG---TGG 239
Query 60 CGGCTCTTCTTCCACCGCTATGGCTGGATCCTCCTCCTCCTCTGCCTCCGCTTCTTCTTC 119
| ||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||||
Sbjct 240 TGTCTCTTCTTCCACCGCCATGGCTGGATCTTCCTCCGCCTCCGCCTCCGCTTCTTCTTC 299
Query 120 TTCTAGGGAAGTTTTTGAATTTGAGTATTTGGATGATAGTGTTTTGGAGGAGCTCCTTGA 179
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 TTCTAGGCAAGTTTTTGAATTTGAGTACTTGGATGATAGTGTTTTGGAGGAGCTCCTTGA 359
Query 180 GGAAGAAGAGAAGCCTAAGAAGGGCAAGAAGAAGTGA 216
||||| |||||| ||||| |||||||||||||| |||
Sbjct 360 GGAAGGAGAGAAACCTAACAAGGGCAAGAAGAAATGA 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9651407808
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5