BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915917

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G67035.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   287    5e-77


> AT1G67035.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT5G38300.1). 
| chr1:25018077-25019057 FORWARD LENGTH=981
Length=981

 Score =  287 bits (155),  Expect = 5e-77
 Identities = 185/200 (93%), Gaps = 0/200 (0%)
 Strand=Plus/Plus

Query  120  GTCGTCGTCTTCTTCGTTGGCTCAATCGGTTCCTGGTTTCTCTGCTCTGATTCGTATAGA  179
            ||| || |||||||||||||||||||| ||||||| ||||||| || ||||||||| |||
Sbjct  399  GTCTTCTTCTTCTTCGTTGGCTCAATCTGTTCCTGATTTCTCTTCTATGATTCGTAAAGA  458

Query  180  GAATCGTCGACCACCGGTTAATTCGAATTTGCTTCCTCGGAGAACAGAACTTACTCTACC  239
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  459  GAATCGTCGACCACCAGTTAATTCGAATTTGCTTCCTCGGAGAACAGAACTTACTCCACC  518

Query  240  GCCGGTGAAGAGTAGAAACGCTGCCGTTTACGCTGGATCAGTGGTTAGAGGAAGTGTTTC  299
            | || |||||||||||||||| ||||||| ||||||||| ||| ||||||||||||||||
Sbjct  519  GTCGATGAAGAGTAGAAACGCCGCCGTTTTCGCTGGATCTGTGATTAGAGGAAGTGTTTC  578

Query  300  AGCGAGTGCTGGTGAGAAGA  319
            ||||||||||||||||||||
Sbjct  579  AGCGAGTGCTGGTGAGAAGA  598



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5