BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915921
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43290.1 | Symbols: WRKY49, ATWRKY49 | WRKY DNA-binding prot... 1146 0.0
> AT5G43290.1 | Symbols: WRKY49, ATWRKY49 | WRKY DNA-binding protein
49 | chr5:17371838-17373201 REVERSE LENGTH=1092
Length=1092
Score = 1146 bits (620), Expect = 0.0
Identities = 757/824 (92%), Gaps = 6/824 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGAAAAAGGTTCTCAGTGGACAAGAAGGTGTGGAAACGACGCCGTTGAAGATATT 60
|||| |||| |||||| ||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 119 ATGGAAGAAGAAGGTTATCAGTGGGCAAGAAGGTGTGGAAACAACGCCGTTGAAGATCCT 178
Query 61 TTTGTTAATGAGCCACCTCTATTCTTTCTTTCTCAAGAACAACATC--AT--A--GGCTC 114
|||||| ||||||||||||| |||||||| ||||||| ||||||| || | |||||
Sbjct 179 TTTGTTTATGAGCCACCTCTTTTCTTTCTGCCTCAAGACCAACATCATATGCATGGGCTC 238
Query 115 ATGCCATATGAAGATTCCATTACCAACAAGTTTGTCACATCAACACTTTACTCCGGTCCG 174
|||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||||||
Sbjct 239 ATGCCAAATGAAGATTTCATTGCCAACAAGTTCGTCACATCAACACTTTACTCCGGTCCA 298
Query 175 CGAATCCAAGATATCGCAAACGCTCTGGTCTTGGTTGAACCCCTGTCCCACCCAGTCCGG 234
|||||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct 299 CGAATCCAAGATATTGCAAACGCTCTGGCCTTGGTCGAACCCCTGACCCACCCAGTCCGA 358
Query 235 GAAATCTCCAAATCAACGGTTCCACGGTTGGAAAGAAGTACTTTGAACAAGGTGGATAAG 294
|||||||| |||||||| ||||| | ||||||||||||||||||| ||||||||||| |
Sbjct 359 GAAATCTCTAAATCAACAGTTCCTCTTTTGGAAAGAAGTACTTTGAGCAAGGTGGATAGG 418
Query 295 TACACTTTAAAGGTGAAGAATAATAGTAATGGAATGTGTGATGATGGATACAAATGGAGA 354
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 419 TACACTTTAAAGGTGAAGAACAATAGTAATGGAATGTGTGATGATGGATACAAATGGAGA 478
Query 355 AAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCGAGGAGTTATTACAAGTGCACA 414
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 479 AAATATGGCCAAAAATCAATCAAAAATAGCCCTAACCCAAGGAGTTATTACAAGTGCACA 538
Query 415 AACCCAATATGCAATGCTAAGAAGCAAGTGGAGAGATCAATTGATGAGCCTAACACATAT 474
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 539 AACCCAATATGCAATGCAAAGAAGCAAGTGGAGAGATCAATTGATGAGTCTAACACATAT 598
Query 475 ATCATCACCTACGAAGGTTTCCACTTTCACTATACTTACCCTTTCTTCCTACCCGATAAG 534
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 ATCATTACCTACGAAGGTTTCCACTTCCACTATACTTACCCTTTCTTCCTACCCGATAAG 658
Query 535 ACACATCAATGGCCCAATaaaaaaaCGAAAATACATAAATATTATGCTCAAGAGATGAAC 594
|||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||||
Sbjct 659 ACACGTCAATGGCCCAATAAAAAAACGAAAATACATAAACATAATGCTCAAGATATGAAC 718
Query 595 AACGGATCTCAAACCCAAGAAGAAAGCAAAGAAGCCCAATTAGGTGAGCCCGCCAACCAA 654
|| |||||||||||||||||| ||||||||||| ||||||||||||| | ||||||||
Sbjct 719 AAAAAATCTCAAACCCAAGAAGAGAGCAAAGAAGCACAATTAGGTGAGCTCACCAACCAA 778
Query 655 AATCAGCCAGTCCATAAGGCCCAAGAAAACACACCGGTAAATCTCGAAGATGAATTGTTT 714
||||| |||||| |||| ||||||||||||||||||| |||||||||||| | |||||||
Sbjct 779 AATCATCCAGTCAATAAAGCCCAAGAAAACACACCGGCAAATCTCGAAGAGGGATTGTTT 838
Query 715 TTCCCGGTTGATCAGTGTCGACGGCAACAAGGGCTTTTAGAAGATGTGGTGGCTCCAGCA 774
|| ||||||||||||||||| | ||||||||||||| ||||||||||||| ||||| |||
Sbjct 839 TTTCCGGTTGATCAGTGTCGGCCGCAACAAGGGCTTCTAGAAGATGTGGTAGCTCCGGCA 898
Query 775 ATGAAAAATATTCCGACTAAGGACAGTGTTTTGACAGCTTCTTG 818
|||||||||||||| || | ||||||||||||||||||||||||
Sbjct 899 ATGAAAAATATTCCTACCAGGGACAGTGTTTTGACAGCTTCTTG 942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5