BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915922
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43285.1 | Symbols: | Putative membrane lipoprotein | chr5:... 246 7e-65
AT5G43510.2 | Symbols: | Putative membrane lipoprotein | chr5:... 224 3e-58
AT5G43513.1 | Symbols: | Putative membrane lipoprotein | chr5:... 222 1e-57
AT5G43525.1 | Symbols: | Putative membrane lipoprotein | chr5:... 219 1e-56
AT5G43518.1 | Symbols: | Putative membrane lipoprotein | chr5:... 213 7e-55
AT5G43516.1 | Symbols: | pseudogene of a defensin-like (DEFL) ... 209 9e-54
> AT5G43285.1 | Symbols: | Putative membrane lipoprotein | chr5:17370475-17370857
REVERSE LENGTH=285
Length=285
Score = 246 bits (133), Expect = 7e-65
Identities = 222/263 (84%), Gaps = 13/263 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttt-tatttttcactcttttaatttttgtttCTTCATGTACATCAAT 59
|||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTGA-TTTTTATATTTTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAAT 59
Query 60 ACTTATAAAGGAATCTAGTGGAGAAGAGACAACT-TATTATTTCAATCCAGCAGCAAGTC 118
|||||||||||||||||||| |||||||| || | ||| ||||||||||| ||||||||
Sbjct 60 ACTTATAAAGGAATCTAGTGAAGAAGAGAGAA-TATATCCTTTCAATCCAGTAGCAAGTC 118
Query 119 CTTTCGATCCATATGCTTTGAACCAAGAACTTCTTCAACA-AGG-ATGGATTGGTTATTG 176
||||||||||| | | |||||||| | | ||| || | ||| | |||||||||||
Sbjct 119 CTTTCGATCCACGTTCACTGAACCAA-A--TACTTAAA-ATAGGCAAA-ATTGGTTATTG 173
Query 177 TTTTGATTGCGCAAGAGCTTGTATGAGAAG-GAAAAAATATATAAAAAGATGTAGTTTGG 235
|||||||||||||||||||||||||||||| || | ||||| | ||||||||| |
Sbjct 174 TTTTGATTGCGCAAGAGCTTGTATGAGAAGAGATAGG-TATATTCGCACATGTAGTTTTG 232
Query 236 AAAGGCATCTTTGTCGTTGCAGT 258
|||| | |||||||||||||||
Sbjct 233 AAAGAAAACTTTGTCGTTGCAGT 255
> AT5G43510.2 | Symbols: | Putative membrane lipoprotein | chr5:17474111-17474478
FORWARD LENGTH=273
Length=273
Score = 224 bits (121), Expect = 3e-58
Identities = 229/280 (82%), Gaps = 11/280 (4%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatttttcactcttttaatttttgtttCTTCATGTACATCAATA 60
||||||||| || || |||| || ||||| |||||||||||||||||||||||||||| |
Sbjct 1 ATGAAGTTGCCTATTATATTCTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAACA 60
Query 61 CTTATAAA-GGAATCTAGTGGA-GAAGAGACAACTTATTATTTCAATCCAGCAGCAAGTC 118
|||||||| || ||||||| || ||||||| ||| |||| ||||| |||| || ||||||
Sbjct 61 CTTATAAATGG-ATCTAGT-GATGAAGAGAGAACATATTCTTTCAGTCCAACAACAAGTC 118
Query 119 CTTTCGATCCATATGCT--TTGAACCAAGAACTTCTTCAACAAGGATGGATTGGTTATTG 176
|||| ||||| | ||| |||||||||||| | | || ||| | |||||||| ||
Sbjct 119 CTTTTGATCC--ACGCTCACTGAACCAAGAAC-T-TAAAATTGGGA-GAATTGGTTACTG 173
Query 177 TTTTGATTGCGCAAGAGCTTGTATGAGAAGGAAAAAATATATAAAAAGATGTAGTTTGGA 236
|||||||||||||||||||||||||||| || || ||||| | ||||||||| ||
Sbjct 174 TTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTCGTACATGTAGTTTTGA 233
Query 237 AAGGCATCTTTGTCGTTGCAGTATTAAAGATATTCAATAA 276
||| | ||||||||||||||||||| |||||| |||||
Sbjct 234 AAGAAAACTTTGTCGTTGCAGTATTAGTGATATTAAATAA 273
> AT5G43513.1 | Symbols: | Putative membrane lipoprotein | chr5:17477999-17478390
FORWARD LENGTH=297
Length=297
Score = 222 bits (120), Expect = 1e-57
Identities = 230/282 (82%), Gaps = 12/282 (4%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatt-tt--tcactcttttaatttttgtttCTTCATGTACATCA 57
||||||||| ||||| |||| || | ||||| |||||||||||||||||||||||||||
Sbjct 22 ATGAAGTTGCCTTTTATATTCTTAATTACTCTATTAATTTTTGTTTCTTCATGTACATCA 81
Query 58 ATACTTATAAAGGAATCTAGTGGA-GAAGAGACAACTTATTATTTCAATCCAGCAGCAAG 116
||||||||||| |||||||||| | ||||||| ||| |||| ||||| |||| || ||||
Sbjct 82 ATACTTATAAATGAATCTAGTG-ATGAAGAGAGAACATATTCTTTCAGTCCAACAACAAG 140
Query 117 TCCTTTCGATCCATA-TG-CTTTGAACCAAGAACTTCTTCAACAAGGATGGATTGGTTAT 174
|||||| |||||| | ||| |||||||||||| || ||| | ||||||||
Sbjct 141 TCCTTTTGATCCACGCTCACTT--AACCAAGAACTTAA--AATTGGGA-GAATTGGTTAC 195
Query 175 TGTTTTGATTGCGCAAGAGCTTGTATGAGAAGGAAAAAATATATAAAAAGATGTAGTTTG 234
|||||||||||||||||||||||||||||| || || ||||| | |||||||||
Sbjct 196 TGTTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTCGTACATGTAGTTTT 255
Query 235 GAAAGGCATCTTTGTCGTTGCAGTATTAAAGATATTCAATAA 276
||||| | ||||||||||||||||||| | |||| |||||
Sbjct 256 GAAAGAAAACTTTGTCGTTGCAGTATTAGTGGTATTAAATAA 297
> AT5G43525.1 | Symbols: | Putative membrane lipoprotein | chr5:17488149-17488516
FORWARD LENGTH=273
Length=273
Score = 219 bits (118), Expect = 1e-56
Identities = 229/281 (81%), Gaps = 13/281 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatttttcactcttttaatttttgtttCTTCATGTACATCAATA 60
||||||||| || || |||| || ||||| ||||||||||||||||||||||||||| ||
Sbjct 1 ATGAAGTTGCCTATTATATTCTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAGTA 60
Query 61 CTTATAAA-GGAATCTAGTGGA-GAAGAGACAACTTATTATTTCAATCC-AGCAGCAAGT 117
|||||||| || ||||||| || ||||||| ||| |||| ||||| ||| || |||||||
Sbjct 61 CTTATAAATGG-ATCTAGT-GATGAAGAGAGAACATATTCTTTCAGTCCAAG-AGCAAGT 117
Query 118 CCTTTCGATCCATATGCT--TTGAACCAAGAACTTCTTCAACAAGGATGGATTGGTTATT 175
||||| ||||| | ||| |||||||||||| | | || ||| | |||||||| |
Sbjct 118 CCTTTTGATCC--ACGCTCACTGAACCAAGAAC-T-TAAAATTGGGA-GAATTGGTTACT 172
Query 176 GTTTTGATTGCGCAAGAGCTTGTATGAGAAGGAAAAAATATATAAAAAGATGTAGTTTGG 235
||||||||||||||||||||||||||||| || || ||||| | ||||||||| |
Sbjct 173 GTTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTCGTACATGTAGTTTTG 232
Query 236 AAAGGCATCTTTGTCGTTGCAGTATTAAAGATATTCAATAA 276
|||| | |||||||||| |||||||| |||||| |||||
Sbjct 233 AAAGAAAACTTTGTCGTTACAGTATTAGTGATATTAAATAA 273
> AT5G43518.1 | Symbols: | Putative membrane lipoprotein | chr5:17484366-17484852
FORWARD LENGTH=392
Length=392
Score = 213 bits (115), Expect = 7e-55
Identities = 228/281 (81%), Gaps = 13/281 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTG-ACttttttatttttcactcttttaatttttgtttCTTCATGTACATCAAT 59
|||||| || ||| | |||| || ||||| |||||||||||||||||||||||||||||
Sbjct 69 ATGAAG-TGTCCTTCTATATTCTTAACTCTATTAATTTTTGTTTCTTCATGTACATCAAT 127
Query 60 ACTTATAAAGGAATCTAGTGGA-GAAGAGACAACT-TATTATTTCAATCCAGCAGCAAGT 117
||||||||| |||||||||| | ||| ||| || | |||| ||||| |||| || |||||
Sbjct 128 ACTTATAAATGAATCTAGTG-ATGAACAGAGAA-TATATTCTTTCAGTCCAACAACAAGT 185
Query 118 CCTTTCGATCCATATGCTT--TGAACCAAGAACTTCTTCAACAAGGATGGATTGGTTATT 175
||||| |||||| ||| |||||||||||||| || ||| | |||||||| |
Sbjct 186 CCTTTTGATCCAC--GCTCACTGAACCAAGAACTTAA--AATTGGGA-GAATTGGTTACT 240
Query 176 GTTTTGATTGCGCAAGAGCTTGTATGAGAAGGAAAAAATATATAAAAAGATGTAGTTTGG 235
||||||||||||||||||||||||||||| || || ||||| | ||||||||| |
Sbjct 241 GTTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTCGTACATGTAGTTTTG 300
Query 236 AAAGGCATCTTTGTCGTTGCAGTATTAAAGATATTCAATAA 276
|||| | ||||||||||||||||||| |||||| |||||
Sbjct 301 AAAGAAAACTTTGTCGTTGCAGTATTAGTGATATTAAATAA 341
> AT5G43516.1 | Symbols: | pseudogene of a defensin-like (DEFL)
family protein. | chr5:17482275-17482644 FORWARD LENGTH=275
Length=275
Score = 209 bits (113), Expect = 9e-54
Identities = 229/283 (81%), Gaps = 15/283 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTGACttttttatt-tt--tcactcttttaatttttgtttCTTCATGTACATCA 57
||||||||| | |||| ||| || | ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTG-CCTTTTAATTCTTAATTACTCTATTAATTTTTGTTTCTTCATGTACATCA 59
Query 58 ATACTTATAAAGGAATCTAGTGGA-GAAGAGACAACT-TATTATTTCAATCCAGCAGCAA 115
||||||||||| |||||||||| | ||| ||| || | |||| ||||| |||| || |||
Sbjct 60 ATACTTATAAATGAATCTAGTG-ATGAACAGAGAA-TATATTCTTTCAGTCCAACAACAA 117
Query 116 GTCCTTTCGATCCATATGCTT--TGAACCAAGAACTTCTTCAACAAGGATGGATTGGTTA 173
||||||| |||||| ||| |||||||||||||| || ||| | ||||||||
Sbjct 118 GTCCTTTTGATCCAC--GCTCACTGAACCAAGAACTTAA--AATTGGGA-GAATTGGTTA 172
Query 174 TTGTTTTGATTGCGCAAGAGCTTGTATGAGAAGGAAAAAATATATAAAAAGATGTAGTTT 233
|||||||||||||||||||||||||||||| || || ||||| | |||||||||
Sbjct 173 CTGTTTTGATTGCGCAAGAGCTTGTATGAGACGGGGTAAGTATATTCGTACATGTAGTTT 232
Query 234 GGAAAGGCATCTTTGTCGTTGCAGTATTAAAGATATTCAATAA 276
||||| | ||||||||||||||||||| | |||| |||||
Sbjct 233 CGAAAGAAAACTTTGTCGTTGCAGTATTAGTGGTATTAAATAA 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12667472748
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5