BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915927

Length=798
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45590.1 | Symbols:  | Protein kinase superfamily protein | ...   102    5e-21


> AT2G45590.1 | Symbols:  | Protein kinase superfamily protein 
| chr2:18786658-18788988 FORWARD LENGTH=2331
Length=2331

 Score =  102 bits (55),  Expect = 5e-21
 Identities = 62/65 (95%), Gaps = 1/65 (2%)
 Strand=Plus/Plus

Query  125   AGAGA-ATTGGTGGTGGAAACATGACAACAATGGTGGAAGCAGAGGAGGGATTGAATCAA  183
             ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct  1173  AGAGAGATTGGTGGTGGAAACAGGACAACAATGGTGGAAGCAGAGGAGGGATTGAATCAG  1232

Query  184   GGAGT  188
             |||||
Sbjct  1233  GGAGT  1237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38830995631


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5