BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915934
Length=417
Score E
Sequences producing significant alignments: (Bits) Value
AT3G44096.1 | Symbols: | transposable element gene | chr3:1585... 233 8e-61
AT3G44060.1 | Symbols: | F-box/RNI-like superfamily protein | ... 182 3e-45
AT3G44090.1 | Symbols: | F-box family protein | chr3:15839123-... 174 5e-43
> AT3G44096.1 | Symbols: | transposable element gene | chr3:15859368-15863166
REVERSE LENGTH=3799
Length=3799
Score = 233 bits (126), Expect = 8e-61
Identities = 301/384 (78%), Gaps = 18/384 (5%)
Strand=Plus/Plus
Query 32 ATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACATTACAAAGAATATC 91
|||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 407 ATGTATTTTTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACGTTACAAT-AATTTT 465
Query 92 A-AGGAAATTCATATGTCGTATCCAGCAAAA-CTATTAAAAAACTCTCGGTTACCTTTAG 149
| ||||| |||||| || |||||||||||| | ||||| |||||||| |||| | |||
Sbjct 466 AGAGGAAGTTCATACGTTATATCCAGCAAAAGC-ATTAAGAAACTCTCAGTTATCAATAG 524
Query 150 CTTTGGTT-TTGCTTATGCT-ATTTCTAGAATAATTTCATTTGACACACCAAATGTTGTC 207
| | ||| || | ||| | || ||| | ||| || |||| ||||| |||||||||
Sbjct 525 CAGTAGTTGTTA-TGATGGTCATCA-TAGCGTTATTACACTTGATACACCCAATGTTGTC 582
Query 208 GACTTCTACTACTCTGATTATATTT-G--TGAATCTCCACAATGTCGCTGGGATTCACTT 264
|||||||||||||||| || | || | | || |||||| ||| | |||||||||
Sbjct 583 GACTTCTACTACTCTGGTTTTCTTCAGCCTAAAGATCCACATTGTAATTTAGATTCACTT 642
Query 265 GCCAAAGCAACGTTGGACCTTTATTTCTTT-AATGATGACAAGCGCTATGTGCAAAATGG 323
|||||||| || |||||||| ||||||| || |||||||| || | ||||||||||
Sbjct 643 GCCAAAGCTACACTGGACCTTCATTTCTTAGAA-GATGACAATAGCCAGGTGCAAAATGA 701
Query 324 CGCGGAGGTGACTGATCTCATCACTGG-GATACGCAATGTCAAGACCCTTCACTTGACTT 382
|||||| || | ||||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct 702 CGCGGATGTAAAAAATCTCATCAA-GGAGATACACAACGTCAAGACCCTTCACTTGACTT 760
Query 383 -CTTCTACTGTCGAGGTGA-TTTT 404
||| ||||||| || | ||||
Sbjct 761 GCTTGG-CTGTCGAAGTCAGTTTT 783
> AT3G44060.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:15824938-15826391 REVERSE LENGTH=1284
Length=1284
Score = 182 bits (98), Expect = 3e-45
Identities = 311/411 (76%), Gaps = 25/411 (6%)
Strand=Plus/Plus
Query 15 GGAGGATCAATCATTTGATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCAT 74
||| ||||||| || | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 495 GGATGATCAATTATCTAATGTGTTTCTCGCTGCATGCCCTGCACTTGAGGACTTAACCAT 554
Query 75 ACATTACAAAGAATATCAAGGAAATTCATATGTCGTATCCAGCAAAA-CTATTAAAAAAC 133
|||| ||| | ||||| | | | ||| |||||||||||| | ||||| ||||
Sbjct 555 ACATCACAC-G--TATCACCCA--TGC----GTCATATCCAGCAAAAGC-ATTAAGAAAC 604
Query 134 TCTCGGTTACCTTTAGCTTTGGTT-TTGCTTATGCTATTTCTAGAATAATTTCATTTGAC 192
| || ||| | ||| | ||||| || | |||| || || | || || |||||
Sbjct 605 TTTCACTTAGCGTTAACAGTGGTTATTA-TGGTGCTGGTTATAT--TC-TTACACTTGAC 660
Query 193 ACACCAAATGTTGTCGACTTCTACTACTCTGATTATATTTGTGAAT--C--TCCACAATG 248
|| |||| |||||||||| ||||||||||||||| | | | || | ||||| |
Sbjct 661 ACGCCAAGTGTTGTCGACCTCTACTACTCTGATTCCCCTCG-GCATAACGCTCCACTTTT 719
Query 249 TCGCTGGGATTCACTTGCCAAAGCAACGTTGGACCTTTATTTCTTT-AATGATGACAAGC 307
|| | ||||||||||| |||| || ||||||||| ||||| | || || |||| |
Sbjct 720 TCATTTAGATTCACTTGCGAAAGTTACATTGGACCTTCATTTCATAGAAA-ATAACAATC 778
Query 308 GCTATGTGCAAAATGGCGCGGAGGTGACTGATCTCATCACTGG-GATACGCAATGTCAAG 366
|| | |||||||||| ||| || |||| ||||||| | || |||| |||| ||||||
Sbjct 779 GCGAGGTGCAAAATGACGCTGATGTGAAAAATCTCATTAG-GGAGATATGCAACGTCAAG 837
Query 367 ACCCTTCACTTGACTTCTTCTACTGTCGAGGTGATTTTGGTATGGTGCAAA 417
|||||||||||||||| |||||| ||||||||||||| |||| ||||||
Sbjct 838 ACCCTTCACTTGACTTGTTCTACAGTCGAGGTGATTTCCGTATACTGCAAA 888
> AT3G44090.1 | Symbols: | F-box family protein | chr3:15839123-15840759
FORWARD LENGTH=1350
Length=1350
Score = 174 bits (94), Expect = 5e-43
Identities = 300/395 (76%), Gaps = 32/395 (8%)
Strand=Plus/Plus
Query 20 ATCAATCATTTGATGTGTTTCTCGCTGCTTGCCCTGCACTTGAGGACTTAACCATACATT 79
|||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 575 ATCAATTATCTGATGTGTTTCTCGCAGCTTGCCCTGCACTTGAGGACTTAACCATACATC 634
Query 80 ACAAAGAATATCAAGGAAATTCATATGTCGTATCCAGCAAAA-CTATTAAAAAACTCTCG 138
||| | | || | |||| | | |||| ||||||| | |||| ||||||||
Sbjct 635 ACAT-GT-T-TC--GCCCATTCCT----CATATCTAGCAAAAACC-TTAAGAAACTCTCA 684
Query 139 GTTACCTTTAGCTTTGG-T-TT-TGCTT-ATGCTATTTCTAGAATAATTTCATTTGACAC 194
|||||| ||| ||| | | || || || || | || ||| ||| || || |||||||
Sbjct 685 GTTACCATTAATTTTAGCTATTATG-TTGAT-CG-TT-CTACAATTCTTACACTTGACAC 740
Query 195 ACCAAATGTTGTCGACTTCTACTACTCTGATTATATTTGTGA--AT--CTCCACAATGTC 250
|| |||||||||||| ||||||||||||||| | | | | || ||||||| ||||
Sbjct 741 GCCGAATGTTGTCGACCTCTACTACTCTGATTTTCCTCG-GCCTATAGCTCCACATTGTC 799
Query 251 GCTGGGATTCACTTGCCAAAGC--AACGTTGGACCTTTATTTCTTT-AATGATGACAAG- 306
| ||||| || ||||||| ||| | ||||||| ||| ||| || ||||| | |
Sbjct 800 ATTTAGATTCTCTAGCCAAAGTTGAAC-T-GGACCTTCATTCCTTAGAA-GATGATA-GT 855
Query 307 CGCTATGTGCAAAATGGCGCGGAGGTGACTGATCTCATCACTGGGATACGCAATGTCAAG 366
||| | || ||||||| |||||| || | ||||||| | || |||||||||||| |||
Sbjct 856 CGCCAGGTACAAAATGACGCGGATGTAAAAAATCTCATTAGTGAGATACGCAATGTTAAG 915
Query 367 ACCCTTCACTTGACTTCTTCTACTGTCGAGGTGAT 401
||||||||||| |||| |||| |||| ||| ||||
Sbjct 916 ACCCTTCACTTAACTTATTCTGCTGTTGAGTTGAT 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19755225357
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5