BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915935
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43230.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3011 0.0
> AT5G43230.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G01810.3);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:17348876-17352747 FORWARD LENGTH=2796
Length=2796
Score = 3011 bits (1630), Expect = 0.0
Identities = 1798/1882 (96%), Gaps = 0/1882 (0%)
Strand=Plus/Plus
Query 3 GAATGGAGATGAGAAGAAAGGTTGGAAACATGTAACACTTAAGCACAGCAACAATGAAGC 62
||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 915 GAACGGAGATGAGAAGAAAGGCTGGAAACATGTAACGCTTAAGCACAGTAACAATGAAGC 974
Query 63 AGCACTCGTCTCCGAGATCGAGAATCTACTGAGAGAAGAAGAAAGAAAGAGACAGAGCAA 122
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 975 AGCACTCGTCTCTGAGATCGAGAATCTACTGAGAGAAGAAGAGAGAAAGAGACAGAGCAA 1034
Query 123 TCAACCGGTCATTGTGAGCTCAGAGATTGATCAGAAACAGAAAGAAGATACAAATACCTT 182
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1035 TCAACCGGTCATTGTGAGCGCAGAGATTGATCAGAAACAAAAAGAAGATACAAATGCCTT 1094
Query 183 TCAGCTCAAGAAACAGTTCTCTGAGATCAGATCTGGTCCTGTATCGTTACCTCCCGATGC 242
| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1095 TAAGCTCAAGAAACAGTTCTCTGAGATCAAATCTGGTCCTTTATCGTTACCTCCCGATGC 1154
Query 243 AGCGAAAAAACAGATGAAACTTCGGACAAACACTCTTGCCTTAGGAAGAAAGACTCTAGG 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1155 AGCGAAAAAACAGATGAAACTTCGGACAAATACTCTTGCCTTAGGAAGAAAGACTTTAGG 1214
Query 303 AATGGAAGGTATTCCAAGACTTAAACAGCTTAAGTCTATTCAGTTGCATTTTGACGGAAA 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1215 AATGGAAGGTATTCCAAGACTTAAACAGCTTAAGTCTATTCAGTTGCATTTTGACGGACA 1274
Query 363 CAAAGACGATAGTAGTCaaaaaaaGGCGAATGGAGTGATCAACAAGGTAGGTTTAATAAC 422
|||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1275 CAAAGATGATAGTAGTCACAAAAAGGCGAGTGGAGTGATCAACAAGGTAGGTTTAATAAC 1334
Query 423 TCCGCAAGATTCTAAAACAGAGACGCTTGAAGATGAGTTGAAGGAAGCAGCGGTTCTTGA 482
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1335 TCCGCAAGATTCTAAAACAGAGACGCTTGAAGATGAGCTGAAGGAAGCAGCGGTTCTTGA 1394
Query 483 AGCAGCTGTTTACTCTGTGGTTGCTGAGCATAGTAGCTCCATGAGCAAGGTTCATGCTCC 542
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1395 AGCAGCTATTTACTCTGTGGTTGCTGAGCATACTAGCTCCATGAGCAAGGTTCATGCTCC 1454
Query 543 AGCTCGTCGTCTTGCTAGGTTTTATCTTCATGCTTGTAAAGGAAATGGTTCTGATCAATC 602
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 1455 AGCTCGTCGTCTTGCTAGGTTTTATCTTCATGCTTGTAAAGGAAATGGCTCAGATCATTC 1514
Query 603 TAAGAGAGCCAGTGCGGCTAGAGCCGCGGTTTCTGGATTGATCTTGGTTTCGAAAGCATG 662
|||| |||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1515 TAAGCGAGCCACTGCGGCTAGAGCGGCGGTTTCTGGATTGATATTGGTTTCCAAAGCATG 1574
Query 663 TGGAAATGATGTCCCAAGGTTAACCTTTTGGCTATCAAATTCGATTGTTCTTAGAGCAAT 722
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1575 TGGAAATGATGTTCCAAGGTTAACCTTTTGGCTATCAAATTCGATTGTGCTTAGAGCAAT 1634
Query 723 TTTAAGCCGCGGTATGGAGAAAATGAAGATTATCCCTGAAAAGGCTGGTTCAGATGAATG 782
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1635 TTTAAGCCGCGGTATGGAGAAAATGAAGATTGTCCCTGAAAAGGCTGGTTCAGATGAATG 1694
Query 783 GGAAGATCCTCGAGCATTCCTTGCGGCTTTGGAGAAGTTCGAGTCCTGGATATTCTCTCG 842
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1695 GGAAGATCCTCGAGCATTCCTCGCGGCTTTGGAGAAGTTCGAGTCCTGGATATTCTCCCG 1754
Query 843 AGTTGTTAAATCTGTTTGGTGGCAGAGTATGACACCGCATATGCAATCAGCAGCGGTTAA 902
||||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1755 AGTTGTTAAGTCAGTTTGGTGGCAGAGTATGACGCCGCATATGCAATCTCCAGCGGTTAA 1814
Query 903 AGGATCAATCTCGAGGAAAGTTTCGGGAAAAAGGCGGTTAGGTCATAGGACCCAGGGACT 962
|||||| ||| |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1815 AGGATCTATCGCGAGGAAAGTTTCGGGAAAAAGGCGGTTAGGTCACCGGAACCAGGGACT 1874
Query 963 CTATGCTATAGAGCTATGGAAGAATGCCTTTAGAGCTGCCTGCGAAAGACTTTGTCCACT 1022
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1875 CTATGCTATAGAGCTATGGAAAAATGCCTTTAGAGCTGCCTGTGAAAGACTTTGTCCACT 1934
Query 1023 AAGAGGTTTAAGACAAGAGTGTGGTTGTCTACCTATGCTTGCTAAACTGGTGATGGAACA 1082
|||||||| ||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1935 AAGAGGTTCAAGACAAGAATGTGGTTGTCTACCTATGCTTGCAAAACTGGTAATGGAACA 1994
Query 1083 GTTAATTAGTAGACTTGATGTAGCAATGTTCAATGCGATACTCCGTGAGTCAGCGGGTGA 1142
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1995 GTTAATCAGTAGACTTGATGTAGCAATGTTCAACGCGATACTCCGTGAGTCAGCGGGTGA 2054
Query 1143 AATGCCGACAGATCCTGTATCTGATCCGGTCAGTGACATAAATGTTCTTCCCATTCCAGC 1202
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 2055 AATGCCGACAGATCCTGTCTCTGATCCGATCAGTGACATAAATGTTCTTCCCATTCCAGC 2114
Query 1203 AGGAAAAGCAAGTTTTGGGGCAGGCGCACAACTAAAAAACGCGATTGGAACTTGGTCAAG 1262
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 2115 AGGAAAAGCAAGTTTTGGGGCCGGCGCACAACTAAAAAATGCGATTGGAACTTGGTCAAG 2174
Query 1263 ATGGCTTGAGGATCAATTTGAGCAAAGGGAGGACAAATCTCGTAGAAACAAAGATGAAGA 1322
||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct 2175 ATGGCTTGAGGATCAATTTGAACAAAAGGAGGACAAATCTGGTAGAAACAAAGATGAAGA 2234
Query 1323 TAACAATAACAAGGAGAAGCCAGAGTGTGAACATTTCAGACTGTTCCATTTACTTAACTC 1382
||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 2235 TAACAATGACAAGGAGAAGCCAGAGTGTGAACATTTCAGATTGTTCCATTTACTCAACTC 2294
Query 1383 GTTAGGTGATCTAATGATGCTTCCATTCAAAATGCTTGCAGACAAATCCACAAGAAAAGA 1442
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 GTTAGGTGATCTTATGATGCTTCCATTCAAAATGCTTGCAGACAAATCCACAAGAAAAGA 2354
Query 1443 GGTTTGTCCAACTCTTGGTCCACCAATAATAAAGAGAGTTCTTCGGAACTTTGTCCCAGA 1502
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2355 GGTTTGTCCAACCCTTGGTCCACCAATAATAAAGAGAGTTCTTCGAAACTTTGTCCCAGA 2414
Query 1503 TGAGTTTAACCCCCACAGAATCCCTAGAAGGCTTTTCGATGTTCTGAACTCCGAGGTCTT 1562
|||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||
Sbjct 2415 TGAGTTTAACCCACACAGAATCCCAAGAAGGCTATTCGATGTTCTGAACTCCGAGGGATT 2474
Query 1563 AACAGAGGAAGACACTGGTTGCATCACAGTCTTCCCTTCTGCTGCATCGCCTACGATCTA 1622
||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||
Sbjct 2475 AACGGAGGAAGACAATGGATGCATCACAGTCTTCCCTTCCGCTGCATCGCCTACGGTCTA 2534
Query 1623 CCTAATGCCGTCTACAGATTCCATAAAACGCTTCATTGGAGAGTTGAACAATCCGTCCTT 1682
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 2535 CCTAATGCCGTCTACAGATTCCATAAAACGCTTCATAGGAGAGTTGAACAATCCGTCCAT 2594
Query 1683 ATCTGAAACCGGATCATCGGTATTTAAGAAACAATACACCAGTGACGATGAACTTGATGA 1742
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 2595 ATCTGAAACCGGATCATCGGTATTTAAGAAACAATATACCAGCGACGATGAGCTTGATGA 2654
Query 1743 CTTAGATACATCCATTAACTCTATATTCTCTGCTCCTGGAACAACCAATTCATCAGAGTG 1802
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2655 CTTAGATACGTCCATTAACTCTATATTCTCTGCTCCTGGAACAACCAATTCATCAGAGTG 2714
Query 1803 GATGCCGAAAGGATATGGACGCAGAAAGACTGTAAGATATCAGCTCCTTAGAGAAATATG 1862
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2715 GATGCCGAAAGGATATGGACGCAGAAAGACTGTAAGATATCAACTCCTTAGAGAAATATG 2774
Query 1863 GAAAGAAGATGGGTTACAATGA 1884
|||||||||||| ||||||||
Sbjct 2775 GAAAGAAGATGGAATACAATGA 2796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93272612610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5