BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915936

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G43230.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   970    0.0  


> AT5G43230.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G01810.3); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:17348876-17352747 FORWARD LENGTH=2796
Length=2796

 Score =  970 bits (525),  Expect = 0.0
 Identities = 607/648 (94%), Gaps = 0/648 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGTTGGGTCTTCGAACAAAGAGTCGTAGAGACAATGGAGTGTTCGTTGAGTATCTA  60
            ||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct  250  ATGGTATTGGGTCTTCGGACAAAGAGCCGTAGAGACAATGGAGTATTCGTTGAGTATCTA  309

Query  61   ATCTCAATCAAGGAGCTAAAACCATGGCCAACAAGCCAAGTCCCTGCACAATGCGTCCTT  120
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  310  ATCTCAATCAAAGAGCTAAAACCATGGCCAACAAGCCAAGTCCCTGCACAATGCGTCCTT  369

Query  121  CTCAAATGGGAAAACGGCGAAAACAACTCAGGCTCTTTCATTGCGGTCGTGGGCAAAGAC  180
            |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct  370  CTCAAATGGGAAAACGGCGAAAACAATTCAGGCTCCTTCATCGCGGTCGTGGGCAAAGAC  429

Query  181  ACGATCATGTTCAACGAGTCCTTTAGGCTAACCTTAACGTTAGAACCCAAAGTTGGTTCC  240
            || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct  430  ACTATCATGTTCAACGAGTCTTTTAGGCTAACATTAACGTTAGAACCCAAAGTTGGGTCC  489

Query  241  GACAATAAGTTCCACAAGAATCTTCTTGAACTTCATGTATACGACGCCAAAAAGAAAGAT  300
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| 
Sbjct  490  GACAATAAGTTCCACAAGAATCTTCTTGAACTTCATGTCTACGACGCGAAAAAGAAAGAC  549

Query  301  AAAGGCGTCAAGAACAAGCTTCTTGGTACAGCCTCGGTCAACCTCGCTGATTTCGGCGTG  360
            || ||||||||||||||||||||||||||||| |||||||| || || ||||| ||| ||
Sbjct  550  AAGGGCGTCAAGAACAAGCTTCTTGGTACAGCATCGGTCAATCTTGCGGATTTTGGCTTG  609

Query  361  TTGACTAATTCTGTCCCCGTAGGAGCTCCGTTTACTTTCAAGAAAAGCTCGAGGAATGAC  420
            ||||| || || |||||||| ||||||||||| ||||||||||||||||| ||||| |||
Sbjct  610  TTGACCAACTCGGTCCCCGTTGGAGCTCCGTTCACTTTCAAGAAAAGCTCAAGGAACGAC  669

Query  421  GCTAGCTCTGAGATTTACCTAACTGTTGAGCCAGCCGGAGAGGAAGATTACGATGAAGGA  480
            ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct  670  GCTAGCTCTGAGATTTACCTAACTGTTGAACCGGCCGGAGAGGAGGATTACGATGAAGGA  729

Query  481  AATCGGAGTAGCGGTTCGTCGCAGCCGAAGATGAGCTTTTCAAGAAGATCTGTTGAAGGT  540
            ||| |||||||||||||||||||||||||||||||||| || |||||||| || || || 
Sbjct  730  AATAGGAGTAGCGGTTCGTCGCAGCCGAAGATGAGCTTCTCGAGAAGATCGGTAGATGGC  789

Query  541  AGTGAGTTTAGTTTGGCGTCGTTGACGGATGACGATGATGATGCTTCGTCAGTGTCTTCT  600
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  790  AGTGAGTTTAGTTTGGCGTCATTGACGGATGACGATGATGATGCTTCGTCAGTGTCTTCT  849

Query  601  TCTACACGGAGAGTTTCTTTCTCAGCTATGTGTGATGCTAATTCCACG  648
            || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  850  TCGACACGGAGAGTTTCTTTCTCAGCTATGTGTGATGCTAATTCCACG  897



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32652195550


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5