BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915946

Length=192
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38660.1 | Symbols: APE1 | acclimation of photosynthesis to ...   130    5e-30


> AT5G38660.1 | Symbols: APE1 | acclimation of photosynthesis to 
 environment | chr5:15473109-15475552 REVERSE LENGTH=1092
Length=1092

 Score =  130 bits (70),  Expect = 5e-30
 Identities = 83/89 (93%), Gaps = 2/89 (2%)
 Strand=Plus/Plus

Query  9    AAGAGCTGCTGATTCCACGAGCTCTTCTCCATCAGTAGCTTCCGGTGATAGAGCCCTAAT  68
            |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  247  AAGAGCTGCTGATTCCACGAGCTCTTCTCCATCAGTAGCTTCCGGTGATAGAACCTTAAT  306

Query  69   -CCATGATGATGAATTCACTCAAGCCAAG  96
             || ||||||||||||||||  |||||||
Sbjct  307  TCC-TGATGATGAATTCACTTTAGCCAAG  334



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8500928319


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5