BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915958
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43100.1 | Symbols: | Eukaryotic aspartyl protease family p... 2270 0.0
> AT5G43100.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:17299123-17303058 FORWARD LENGTH=2377
Length=2377
Score = 2270 bits (1229), Expect = 0.0
Identities = 1414/1500 (94%), Gaps = 26/1500 (2%)
Strand=Plus/Plus
Query 1 ATGGATCAAGCTtccttcctcctcctcctc-ctcctcACCACCACCGTCTCTATATTCTT 59
||||||| | ||||| ||||||| |||||| | | |||||||||| |||||||||||||
Sbjct 142 ATGGATCGATCTTCCCTCCTCCTTCTCCTCTTTAC-CACCACCACCATCTCTATATTCTT 200
Query 60 CTTCGATCTAACCACCGCCGATGAGCTCGATTTAACAGCCGAATCGCCGATGATTTTCCC 119
|||||||||||||| || || ||| | ||||||||||||||||||||
Sbjct 201 CTTCGATCTAACCA---CC-----GC-CGA--T-------GAATCGCCGATGATTTTCCC 242
Query 120 TCTTAGCTACTCCTCCTT---A-C-C-ACCGCGAGTCGAGGATTTTCGCCGTCGTCGTCT 173
|||||||||||| ||||| | | | |||||||||||||||||||||||| ||||| ||
Sbjct 243 TCTTAGCTACTCTTCCTTACCACCGCGACCGCGAGTCGAGGATTTTCGCCGCCGTCGCCT 302
Query 174 TCATCAATCTCAGCTCCCTAACGCTCACATGAAACTCTACGATGACCTCCTCTCCAACGG 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TCATCAATCTCAGCTCCCTAACGCTCACATGAAACTCTACGATGACCTCCTCTCCAACGG 362
Query 234 CTACTACACTACACGATTATGGATTGGAACACCACCACAAGAATTTGCTTTGATTGTTGA 293
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 363 CTACTACACTACACGATTATGGATTGGAACACCACCACAAGAGTTTGCTTTGATTGTTGA 422
Query 294 TACTGGAAGTACTGTTACTTACGTTCCTTGCTCTACTTGTAAACAGTGTGGGAAGCATCA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TACTGGAAGTACTGTTACTTACGTTCCTTGCTCTACTTGTAAACAGTGTGGGAAGCATCA 482
Query 354 GGATCCAAAGTTTCAACCTGGGTTATCTAGTAGTTACAAAGCTTTGAAATGTAATCCTGA 413
|||||||||||||||||| | |||||||| ||||||| |||||||||| |||||||||||
Sbjct 483 GGATCCAAAGTTTCAACCAGAGTTATCTACTAGTTACCAAGCTTTGAAGTGTAATCCTGA 542
Query 414 TTGTAATTGTGATGATGAGGGGAAGTTATGTGTTTACGAAAGACGGTATGCTGAGATGAG 473
|||||||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||
Sbjct 543 TTGTAATTGTGATGATGAGGGGAAATTATGTGTCTACGAAAGAAGGTATGCGGAGATGAG 602
Query 474 TTCGAGTAGCGGGGTTTTAAGTGAGGATTTGATATCTTTTGGTAATGAGAGTCAGCTTAC 533
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 603 TTCGAGTAGCGGGGTTTTGAGTGAGGATTTGATATCTTTTGGTAATGAGAGTCAACTTTC 662
Query 534 TCCGCAACGAGCTGTTTTCGGATGTGAGAATGTGGAAACTGGTGATCTTTTTAGCCAACG 593
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 663 TCCGCAACGAGCTGTTTTCGGATGTGAGAATGAGGAGACTGGTGATCTTTTTAGCCAACG 722
Query 594 TGCTGATGGTATAATGGGATTGGGTCGTGGTAAGCTTAGTGTTGTAGATCAGCTTGTTGA 653
|||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||
Sbjct 723 TGCTGATGGTATAATGGGGTTAGGTCGTGGTAAGCTTAGCGTTGTAGATCAGCTTGTCGA 782
Query 654 TAAGGGTGTTATCGAGGATGTTTTTTCGTTGTGTTATGGAGGAATGGAAGTTGGTGGTGG 713
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 783 TAAGGGTGTTATCGAGGATGTTTTTTCCTTGTGTTATGGAGGAATGGAAGTTGGTGGTGG 842
Query 714 TGCTATGGTACTTGGGAAAATATCTCCTCCAGCTGGAATGGTGTATTCTCATTCAGATCC 773
||||||||| ||||| ||||||||||||||| |||||||||||| ||||||||| |||||
Sbjct 843 TGCTATGGTTCTTGGTAAAATATCTCCTCCACCTGGAATGGTGTTTTCTCATTCTGATCC 902
Query 774 TTTCCGCAGTCCGTATTACAACATTGACCTGAAACAAATGCATGTTGCTGGAAAGTCTCT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TTTCCGCAGTCCGTATTACAACATTGACCTGAAACAAATGCATGTTGCTGGAAAGTCTCT 962
Query 834 AAAGCTAAACCCAAAGGTCTTTAATGGAAAGCATGGAACCGTCTTGGATAGTGGAACAAC 893
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAAGCTAAACCCAAAGGTCTTCAATGGAAAGCATGGAACCGTCTTGGATAGTGGAACAAC 1022
Query 894 ATATGCTTATTTTCCCAAGGAAGCATTTATTGCCATAAAGGATGCGATCATTAAGGAAAT 953
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1023 ATATGCTTATTTTCCCAAGGAAGCATTTATTGCCATTAAGGATGCGGTCATTAAGGAAAT 1082
Query 954 TCCATCTCTCAAACGGATCCATGGCCCAGACCCAAATTATGATGATGTTTGTTTCTCAGG 1013
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1083 TCCATCTCTCAAACGGATCCATGGTCCAGACCCAAATTATGATGATGTTTGTTTCTCTGG 1142
Query 1014 CGCTGGAAGGGATGTGGCTGAGATACACAAtttttttCCTGAGATCGATATGGAATTCGG 1073
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 1143 CGCTGGAAGGGATGTGGCTGAGATACACAATTTTTTTCCTGAGATTGCTATGGAATTTGG 1202
Query 1074 TAATGGTCAGAAACTGATTCTTTCTCCCGAGAACTACTTATTCAGGCACACTAAAGTTAG 1133
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 AAATGGTCAGAAACTGATTCTTTCTCCCGAGAACTACTTATTCAGGCACACTAAAGTTAG 1262
Query 1134 AGGCGCATACTGCCTTGGAATCTTTCCTGATAGAGACTCAACAACACTCCTAGGAGGAAT 1193
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1263 AGGCGCATACTGCCTTGGAATCTTTCCTGATAGGGATTCAACAACACTCCTAGGAGGAAT 1322
Query 1194 TGTTGTCCGCAATACTCTTGTCACTTATGATCGTGAGAATGATAAGCTCGGGTTTCTGAA 1253
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1323 TGTTGTTCGCAATACTCTTGTCACCTATGATCGTGAGAATGATAAGCTCGGGTTTCTGAA 1382
Query 1254 GACCAACTGTTCTGATCTATGGAGGAGGCTGGCGGCACCAGAATCTCCTGCACCTACTTC 1313
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GACCAACTGTTCTGATATATGGAGGAGGCTGGCGGCACCAGAATCTCCTGCACCTACTTC 1442
Query 1314 ACCAATTTCCCAAAATAAAAGTTCTAACATTTCCCCAAGCCCTGCTAAAAGCGAGTCTCC 1373
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1443 ACCAATATCCCAAAATAAAAGTTCTAACATTTCTCCAAGCCCTGCTACAAGCGAGTCTCC 1502
Query 1374 TACCACTGATCTTCCAGGTGTTTTACGGGTTGGAGTTATTACCTTCGAAGTTTCAATTAG 1433
|||| || |||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1503 TACCTCTCATCTTCCAGGTGTTTTCCGGGTTGGAGTTATTACCTTCGAAGTATCAATTAG 1562
Query 1434 TGCGAACAATTCTACATTAAAGCCCAAGTTCTCAGAGATTGCTGATTTCATTGCCCATGA 1493
|| |||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1563 TGTGAACAATTCTTCATTGAAGCCCAAGTTCTCAGAGATCGCTGATTTCATTGCCCATGA 1622
Score = 582 bits (315), Expect = 4e-165
Identities = 351/368 (95%), Gaps = 3/368 (1%)
Strand=Plus/Plus
Query 1494 TGGAAATGAGTATCGCCTGAAATGGGGAGTCTTTCCCCCACAATCTTCTGAGTACATTTC 1553
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1671 TGGAAATGAGTATCGCCTGAAATGGGGAGTCTTTCCCCCACAATCTTCCGAGTACATTTC 1730
Query 1554 CAATACGACGGCATTGAACATAATGTTGCTTCTGAAAGAAAACCGATTGCGCCTACCTGG 1613
||| || |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1731 CAACACTACGGCATTGAACATAATGTTGCTTCTGAAAGAAAACCGGTTACGCCTACCTGG 1790
Query 1614 ACAATTTGGAAGCTACAAGTTACTAGAATGGAAGGCTGAGCAAAAGGCA-AAACAGAGCT 1672
||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||||||
Sbjct 1791 ACAATTTGGAAGCTACAAGTTGCTAGAATGGAAAGCTGAGCAAAAGA-AGAAACAGAGCT 1849
Query 1673 GGTGGGAGAAACACTTACTCGGGGTGGTGGGAGGAGCGATGATATCGTTGCTTGTTACTT 1732
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1850 GGTGGGAGAAACACTTACTTGGTGTGGTGGGAGGAGCGATGATATCGTTGCTTGTTACTT 1909
Query 1733 CTGTGATGATCAAACTTGCATTGGTGTGGAGACGGAGAAAGCAAGAAGAAGCTACTTATG 1792
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1910 CGGTGATGATCAAACTTGCATTGGTGTGGAGACGGCGAAAGCAAGAAGAAGCTACTTATG 1969
Query 1793 AGCCTGTAAATGCTACTATTAAAGAACAAGAACTTCAGCCTCTCTCCTCTGACACATCTA 1852
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1970 AGCCTGTAAATGCTGCTATTAAAGAACAAGAACTTCAGCCTCTCTCCTCTGAAACATCTA 2029
Query 1853 ATGC-TGA 1859
|||| |||
Sbjct 2030 ATGCCTGA 2037
Score = 67.6 bits (36), Expect = 4e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1858 GAAAGAAAGAAAATAGAGAGAAAAATGGTTGGAATG 1893
||||||||||||||||||||||||||||||||||||
Sbjct 2211 GAAAGAAAGAAAATAGAGAGAAAAATGGTTGGAATG 2246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98995474740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5