BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915959
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43090.1 | Symbols: APUM13, PUM13 | pumilio 13 | chr5:172959... 1016 0.0
AT5G43110.1 | Symbols: APUM14, PUM14 | pumilio 14 | chr5:173098... 955 0.0
> AT5G43090.1 | Symbols: APUM13, PUM13 | pumilio 13 | chr5:17295933-17298171
FORWARD LENGTH=1584
Length=1584
Score = 1016 bits (550), Expect = 0.0
Identities = 844/984 (86%), Gaps = 28/984 (3%)
Strand=Plus/Plus
Query 549 GATGGAGAACAGGAGAGGCTCGCT-CTATGCCATAGCAAAAGA-CGCAGTGTGGAGCAA- 605
||||||||| |||| |||||| | || | |||| || | ||| || ||| ||||||||
Sbjct 615 GATGGAGAATGGGAGGGGCTCG-TACTTTTCCATTGCTACAGACCG-AGTATGGAGCAAG 672
Query 606 GAAGCTGTTGGAGACTATCTATCAGGGTACTAAAGAGACGATTGATACGATTTTCGACCG 665
||| || | ||||||||| | ||||||||||||||||||||||| ||||||||| |
Sbjct 673 GAA-TTGGAGAAGACTATCTTTGTGGGTACTAAAGAGACGATTGATATGATTTTCGATGG 731
Query 666 TATTATTGTCCATATTTGTGAGTTGATGGTGGATCCTTATGGTAAGGATGTTGTTATGCT 725
| | |||||| |||||||||||||||||| ||||||| |||||| |||||||||| |||
Sbjct 732 TCTCATTGTCGGTATTTGTGAGTTGATGGTTGATCCTTTTGGTAATGATGTTGTTAAGCT 791
Query 726 GCTTATTGGAAAATGCTGCTCTGAACAAATCATTCAGATTGTTGATCTTGTCACTCAGG- 784
|||||| ||||||||| |||||||||| ||||||| |||||||||| ||||||||| ||
Sbjct 792 GCTTATCGGAAAATGCAGCTCTGAACAGATCATTCTGATTGTTGATGTTGTCACTC-GGC 850
Query 785 ACATGTT-TCAGTTTGTTAACATATGCTTTGATCTGCGCGGAACCGCGGCAATACAAGAG 843
|||| || | |||||||||||||||||||| ||| | |||||| |||||||||||
Sbjct 851 ACAT-TTCTAAGTTTGTTAACATATGCTTTAATCCGATCGGAACTTTGGCAATACAAGTT 909
Query 844 CTGTTGGAC-AGTATTCATAAGCGTGCTAATGATCAAATCCCGCGCATCATGGAT-CTTA 901
||||| || ||||||||| |||||||||| |||||||||||||||| |||||| | ||
Sbjct 910 CTGTT-AACTAGTATTCATGAGCGTGCTAACAATCAAATCCCGCGCATTATGGATGC-TA 967
Query 902 TCAA-CTCGGTAGGACTTCAATTGGCAAAGAGCAGCAATGCTAGATTTCTGATTCTCTCA 960
| || |||||||| |||||||||| ||| || || |||||| | || | ||||||| ||
Sbjct 968 T-AAGCTCGGTAGCACTTCAATTGACAAGGAACACCAATGCCAAATATGTGATTCTAGCA 1026
Query 961 TGCTTCCGCCTGTTTCCTCTC-TCGCACTGTAGGTATCTTCTTGAAGTTGTCGCTCAACA 1019
|| |||||| ||||| || || ||||| |||||| |||||||||||||||| |||||||
Sbjct 1027 TGTTTCCGCATGTTTACT-TCGTCGCAGTGTAGGCGTCTTCTTGAAGTTGTCTCTCAACA 1085
Query 1020 TTGTTACGAGATATCGATTGATCAAAATGGCTGCTGCTTG-TATCAGCAATGTTTGGACA 1078
||||||| ||||| ||||||||||||| || ||||||||| | |||||||||||| ||||
Sbjct 1086 TTGTTACCAGATAGCGATTGATCAAAACGGATGCTGCTTGCT-TCAGCAATGTTTTGACA 1144
Query 1079 A-GAATCGTGTTCCGAATCCTGAGATAAGGCAACGTTTGATTTCGGAAGTAATCTCTCAT 1137
| ||| ||||||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 1145 AGGAA-CGTGTTCCGAATCATGAGATAAGGCAACGTTTGATTTCGGAAGTTATCGAACAT 1203
Query 1138 GCGTTGAGACTCTGCTTGAACTGCT-ACGGAAACTATGTGGTTCAGTATATCGTGGAGCT 1196
||||||| ||||||||||||||| | | ||||||||||||||||| ||| ||||||||||
Sbjct 1204 GCGTTGAAACTCTGCTTGAACTG-TCATGGAAACTATGTGGTTCAATATGTCGTGGAGCT 1262
Query 1197 CAATAATCAACATGTGATAAACGCGCTCGTG-AGACAGCTA-ATAGGGAACTATGCACAC 1254
| |||||||||||| | | | ||||||| | | ||||| || |||||||||| ||
Sbjct 1263 CGATAATCAACATGAAACAGATTTGCTCGTGAATA-AGCTACTTA-GGAACTATGCGCAT 1320
Query 1255 CTTGCCCGCAACAAGTATGGAAGTCATGTTGTGCAGAAGTTGTTGAGACTAAGGGGTGTT 1314
|| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1321 CTAGCCCGCAACAAATATGGAAGTCATGTTGTGCAGAAGTTGTTGAAACTAAGGGGTATC 1380
Query 1315 GACACTAGGTTGATTGTGGTTGACTTACTTAGTCAGATTGATACACTTCTTCTTGACCCG 1374
||| ||| | ||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1381 GACTCTAAGCTGATTGTTGTTGACTTGCTTAGAGGGATTGATACACTTCTTCTTGACCCG 1440
Query 1375 TTTGGAAACTATGTCATTCAAACCGCGTGGTTTGTGTCTAAGGACGATGTGCGCCACATG 1434
||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1441 TTTGGTAACTATGTCATTCAAACCGCATGGTTTGTGTCTAAGGAAGATGTGCGCCAGATG 1500
Query 1435 TTGAGGTATCATATAGAGCTTAACATTCGATTGATGAGGTGCAACAAATTTGGGAACAAA 1494
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTGAGGTATTATATAGAGCGTAACATTCGATTGATGAGGTGCAACAAATTTGGGAACAAA 1560
Query 1495 CTTCTGGAGAAACTCAGTATCTAG 1518
||||||||||||||| |||||||
Sbjct 1561 ATTCTGGAGAAACTCAATATCTAG 1584
> AT5G43110.1 | Symbols: APUM14, PUM14 | pumilio 14 | chr5:17309842-17311937
FORWARD LENGTH=1557
Length=1557
Score = 955 bits (517), Expect = 0.0
Identities = 784/910 (86%), Gaps = 29/910 (3%)
Strand=Plus/Plus
Query 622 ATCTATCAGGGTACTAAAGAGACGA-TTGATACGATTTTCGACCGTATTATTGTCCATAT 680
|||| |||||||||||||||||| | ||||| |||||| | || || | |||| | ||||
Sbjct 664 ATCTTTCAGGGTACTAAAGAGAC-AGTTGATGCGATTTACAACGGTCTCATTGGCGATAT 722
Query 681 TTGTGAGTTGATGGTGGATCCTTATGGTAAG-GATGTTGTT-ATGCTGCTTATTG-GAAA 737
|||||||||||||||||||||||||||| || ||||||||| | | |||||| || |||
Sbjct 723 TTGTGAGTTGATGGTGGATCCTTATGGT-AGTGATGTTGTTCA-GTTGCTTA-TGAGAAG 779
Query 738 ATGCTGCTCTGAACAAATCATTCAGATTGTTGATCTTGTCACTCAGGACATGTTTCAGTT 797
|||| |||||||||||||| ||||| | |||||| ||||||||||| | ||||| |||||
Sbjct 780 ATGCAGCTCTGAACAAATCGTTCAGCTCGTTGATATTGTCACTCAGCAAATGTTCCAGTT 839
Query 798 TGTTAACATATGCTTTGA-TCTGCGCGGAACCGCGGCAATACAAGAGCTGTTGGACA-GT 855
||||||||||||| |||| ||| | ||||||| || ||||||| || || |||| ||
Sbjct 840 TGTTAACATATGCATTGATTCT-CTCGGAACCAATGCTATACAAGTTCT-TTTGACATGT 897
Query 856 ATTCATAAGCGTGCTAATGATCAAATCCCGCGCATCATGGATCTTATCAA-CTCGGTAGG 914
||| || |||||||||| |||||||||||||||||| ||||| || | || ||||||
Sbjct 898 ATTAATGAGCGTGCTAAAGATCAAATCCCGCGCATCGTGGATGTTGT-AAGAACGGTAGC 956
Query 915 ACTTCAATTGGCAAAGAGCAGCAATGCTAGATTTCTGATTCTCTCATGCTTCCGCCTGTT 974
|||||||||| ||||||||| | |||| | ||| |||||||| |||||||||| || ||
Sbjct 957 ACTTCAATTGTCAAAGAGCAACCATGCCATCTTTGTGATTCTCGCATGCTTCCGTCTATT 1016
Query 975 TCCTCTCTCGCACTGTAGG-TATCTTCTTGAAGTTGTCGCTCAACATTGTTACGAGATAT 1033
|||| | | |||||||||| || ||||||||| || ||| |||| |||| || |||||
Sbjct 1017 TCCT-T-T-GCACTGTAGGTTA-CTTCTTGAACTTATCGTTCAAAATTGCCACCAGATAG 1072
Query 1034 CGATTGATCAAAATGGCTGCTGCTTG-TATCAGCAATGTTTGGACAAGAATCGTGTTCCG 1092
| ||||||||| | || |||||| || | ||||| |||||| ||||| | || |||||
Sbjct 1073 CCATTGATCAACACGGGTGCTGCCTGCT-TCAGCTATGTTTTAACAAGGACCGGGTTCCA 1131
Query 1093 AATCCT-GAGATAAGGCAACGTTTGATT-TCGGAAGTAATCTCTCATGCGTTGAGACTCT 1150
||| || ||||||||||||||||||||| | ||||| |||| || |||| ||||||||||
Sbjct 1132 AAT-CTAGAGATAAGGCAACGTTTGATTAT-GGAAGCAATCGCTAATGCATTGAGACTCT 1189
Query 1151 GCTTGAACTGCTACGGAAACTATGTGGTTCAGTATATCGTGGAGCTCAATAATCAACATG 1210
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1190 GCTTAAACTGCTACGGAAACTATGTGGTTCAGTATATCGTGGAGCTCAATAATCGTTATT 1249
Query 1211 TGATAAACGCGCTCGTGAGACAGCTAATAGGGAACTATGCACACCTTGCCCGCAACAAGT 1270
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1250 TAATAGACGCGCTCGTGAGACAGCTAATAGGGAACTATGCACACCTTGCCCGCAACAAAT 1309
Query 1271 ATGGAAGTCATGTTGTGCAGAAGTTGTTGAGACTAAGG-GGTGTTGACACTA-GGTTGAT 1328
|||||||||||| ||||||||||||||||| ||||||| || | ||| ||| |||| ||
Sbjct 1310 ATGGAAGTCATGCTGTGCAGAAGTTGTTGAAACTAAGGTGG-ATCGACTCTAGGGTT-AT 1367
Query 1329 TGTGGTTGACTTACTTAGTCAGATTGATACACTTCTTCTTGACCCGTTTGGAAACTATGT 1388
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TGTAATTGACTTGCTTAGAGAGATTGATACACTTCTTCTTGACCCGTTTGGAAACTATGT 1427
Query 1389 CATTCAAACCGCGTGGTTTGTGTCTAAGGACGATGTGCGCCACATGTTGAGGTATCATAT 1448
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1428 CATTCAAACCGCATGGTTTGTGTCTAAGGACGATGTGCGCCGGATGTTGAGGTATCATAT 1487
Query 1449 AGAGCTTAACATTCGATTGATGAGGTGCAACAAATTTGGGAACAAACTTCTGGAGAAACT 1508
||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1488 AGAGCGTAACATTCCAATGATGAGGTGCAACAAATTTGGGAACAAAGTTCTGGAGAAACT 1547
Query 1509 CAGTATCTAG 1518
|| |||||||
Sbjct 1548 CAATATCTAG 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74899213140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5