BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915977

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31450.1 | Symbols:  | Eukaryotic aspartyl protease family p...   433    7e-121


> AT1G31450.1 | Symbols:  | Eukaryotic aspartyl protease family 
protein | chr1:11259872-11261209 REVERSE LENGTH=1338
Length=1338

 Score =  433 bits (234),  Expect = 7e-121
 Identities = 290/317 (91%), Gaps = 4/317 (1%)
 Strand=Plus/Plus

Query  64   AACCTAACCGTTGAGCTAATCCACAGTGACTCTCCTCATTCTCCACTTTACAACCCTCAC  123
            ||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct  82   AACTTAACCGTCGAGCTAATCCACCGTGACTCTCCTCATTCTCCACTCTACAACCCTCAC  141

Query  124  CACACCGTCTCCGACGGTCTAAACGCTGCTTTTCTCCGCTCAATCTCACGCTCTCGCCGT  183
            ||||| ||||| ||| |||| ||||||||||| ||||| ||||||||||| |||||||||
Sbjct  142  CACACTGTCTCTGACCGTCTCAACGCTGCTTTCCTCCGATCAATCTCACGTTCTCGCCGT  201

Query  184  TTCA-ATACCAAAACCGACCTCCAATCCGGGTTGATCTCAAATGGCGGCGAATACTTCAT  242
            |||| | ||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct  202  TTCACA-ACCAAAACCGATCTCCAATCCGGTTTAATCTCAAATGGCGGCGAATACTTCAT  260

Query  243  GAGTATCTCAATCGGTACTCCTCCGTCGAAAGTCCTT-GCCATCGCTGACACGGGAAGTG  301
            |   ||||||||||||||||| |||||||||||  || ||||| ||||||||||||||||
Sbjct  261  GTCCATCTCAATCGGTACTCCACCGTCGAAAGT-TTTCGCCATTGCTGACACGGGAAGTG  319

Query  302  ACCTAACTTGGGTTCAATGCAAGCCATGTCAACAATGTTACAAACAAAACAGTCCACTCT  361
            ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  320  ACCTAACTTGGGTCCAATGTAAGCCATGTCAACAATGTTACAAACAAAACAGTCCACTCT  379

Query  362  TCGACAAGAAGATATCT  378
            |||||||||||| ||||
Sbjct  380  TCGACAAGAAGAAATCT  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5