BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915980

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11950.1 | Symbols:  | Protein of unknown function (DUF1191)...   259    2e-68


> AT4G11950.1 | Symbols:  | Protein of unknown function (DUF1191) 
| chr4:7173276-7174259 REVERSE LENGTH=984
Length=984

 Score =  259 bits (140),  Expect = 2e-68
 Identities = 162/173 (94%), Gaps = 0/173 (0%)
 Strand=Plus/Plus

Query  10   GTGAATCCTTATGAGATTGACGTAATGGGCACGGAACAAAACCCTGTTTTGATCAAGTTC  69
            ||||||||||||||| || |||||||||||||||||||||||||| |||||||||| |||
Sbjct  439  GTGAATCCTTATGAGGTTAACGTAATGGGCACGGAACAAAACCCTATTTTGATCAAATTC  498

Query  70   TTGAGTAGCGAGGCAAGTGGGAGTCCTAAACCTAACACGAAGAAGAACTCATCTCTCTTG  129
            || || || ||||||||||| || |||||||||||||||||||||||||||||| |||||
Sbjct  499  TTAAGCAGTGAGGCAAGTGGTAGCCCTAAACCTAACACGAAGAAGAACTCATCTGTCTTG  558

Query  130  TGTGCTTGCTTCACAAGTAACGGTAACATAACGTTTAGGGAGCAAGTTTCAGC  182
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  559  TGTGCTTGCTTCACAAGTAACGGTAACATAACGTTTAGAGAGCAAGTTTCAGC  611


 Score =  128 bits (69),  Expect = 4e-29
 Identities = 103/119 (87%), Gaps = 4/119 (3%)
 Strand=Plus/Plus

Query  183  AGCTCATGATAGTAGTGGTCGTGATAGTA-GAGTGGTAACGCCGCCGTCATCT-CTGCTG  240
            ||||||||||||| | ||| | | ||||| | |||||||| ||| |||||||| | ||| 
Sbjct  660  AGCTCATGATAGTGGCGGTGGCGGTAGTACG-GTGGTAACACCGTCGTCATCTCCGGCT-  717

Query  241  GTGAATGACGGTGGCGGAGGGAAATTAAGCTGGTGGAAAGTGGCGGTTGGGAGTGTGAT  299
             ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct  718  TTGACTGACGGTGGCGGAGGGAAATTGAGCCGGTGGAAAGTGGCGGTTGGGAGTGTGAT  776



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5