BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg915998
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42910.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 1502 0.0
> AT5G42910.1 | Symbols: | Basic-leucine zipper (bZIP) transcription
factor family protein | chr5:17203742-17205380 FORWARD
LENGTH=1448
Length=1448
Score = 1502 bits (813), Expect = 0.0
Identities = 1022/1121 (91%), Gaps = 22/1121 (2%)
Strand=Plus/Plus
Query 1 ATGGATAGTTACTTGAGACTGAAAAACTTGGTGAATGATTTGCCAGTTAGTACTTCTTTA 60
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 167 ATGGATAGTTACTGGAGACTTAAAAACTTGGTGAATGATTTGCCAGTTAGTACTTCTTTA 226
Query 61 AGCCGACAAGGATCAATATACTCATGGACAGTAGATCAGTTTCAGACCAGCTTAGGGAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 227 AGCCGACAAGGATCAATATACTCATGGACAGTAGATCAGTTTCAGACCAGCTTAGGGTTA 286
Query 121 GATTGTGGATCAATGAACATGGATGAGCTGGTTAAG-ATGATATCTAGTGCTGAAGAAAC 179
||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||
Sbjct 287 GATTGTGGATCAATGAACATGGATGAGTTGGTTAAGCAT-ATATCAAGTGCTGAAGAAAC 345
Query 180 ACAAGAGGGATCGCAGAGGCAAGTCTCAACAACTCTGCCTCGAACACTTAGCCAA-AAAA 238
||||||||| ||||||||||||| |||||| |||||||||| |||||||||| || ||||
Sbjct 346 ACAAGAGGGGTCGCAGAGGCAAGGCTCAACTACTCTGCCTCCAACACTTAGCAAACAAAA 405
Query 239 CTGTTAATGAAGTTTGGAAATATATCTTAGAGGAAGAACACACCAAAAACAATGGAGGAG 298
|||| |||||||||||||| |||| ||||||| |||||||||| |||||||||||||
Sbjct 406 -TGTTGGTGAAGTTTGGAAATCTATCACAGAGGAAAAACACACCAATAACAATGGAGGAG 464
Query 299 TAACAAACAT-ACCTAATCTTCAGAGG-CAACAAACCTTAGGGGAAATCACTCTTGAAGA 356
|||||||||| || | |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 465 TAACAAACATTAC-TCATCTTCAG-GGACAACAAACCTTAGGGGAAATCACTCTTGAAGA 522
Query 357 GTTTTTCATCCGTGCTGGAGAAAGAGGAAATAATACCAATGGTGGCTCCATTCATGACTC 416
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 523 GTTTTTCATCCGTGCTGGAGCAAGAGGAGGTAATACCAATGGTGGCTCCATTCATGACTC 582
Query 417 ATCGTCATCGATTTCCGGTAATCCAAACACAAGTTTGGGTGTTCATATTCAGCCGAAAGC 476
||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |||||
Sbjct 583 ATCGTCATCGATTTCCGGTAATCCACACACTAGTTTGGGTGTTCAGATTCAGCCAAAAGC 642
Query 477 CATGGTTACTGATATTATGAACAATATGGTTCCAAGGAGTCTTGAGTCTAATTTGCATCA 536
||||||| ||||| ||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 643 CATGGTTTCTGATTTTATGAACAATATGGTTCCAAGGAGTCATGATTCTTATTTGCATCA 702
Query 537 AAATGTGAATGGA-CTTATGTCAACATATCAACCACAACAATCTATCATGTCTATGCCTA 595
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 703 AAATGTGAATGGATCT-ATGTCAACATATCAACCACAACAATCTATCATGTCTATGCCAA 761
Query 596 ATGGTTATTCTTACGGAAAACAAATCCGATTCACGAATGGTTTCATGGGTAT-TG--A-C 651
||||||||||||| |||||||||||||||||| | ||||||| | |||| || || | |
Sbjct 762 ATGGTTATTCTTATGGAAAACAAATCCGATTCTCAAATGGTTCCTTGGG-ATCTGGTAAC 820
Query 652 CAAAGACTCCAAGaaaaaaaGAGAAGCTTGGTCCCCAGTGTTACGACAATTCCT-G-GA- 708
||||| |||||||| | ||||||||||||||||| |||||| |||||||||| | ||
Sbjct 821 CAAAGTCTCCAAGATACGAAGAGAAGCTTGGTCCCAAGTGTTGCGACAATTCCAAGTGAA 880
Query 709 GCTATAACATGTTCACCGGTTACTCCATTTCCAACATTAAATGGGATACAAAAAATCGAT 768
|| |||||||||||||||||||| |||||||||||||||||||||| |||||| || |
Sbjct 881 GCCATAACATGTTCACCGGTTACCCCATTTCCAACATTAAATGGGAAACAAAAGATTAAC 940
Query 769 GGTGAGTCTTCATTACTGTCACGATCTCCATACATTAGTAATGGTAGTACTAGTACAAG- 827
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 941 GGTGAGTCTTCATTACTCTCACCATCTCCATACATTAGTAATGGTAGTACTAGTACAAGA 1000
Query 828 GTGTGGGAAGATTCATAATGACATCACCGCGGAGAAACAATTCGTTGACAAAAAGCAAAG 887
| ||||||||||| ||| ||| || |||||||| |||||||||||||||||||||| ||
Sbjct 1001 G-GTGGGAAGATTAATAGTGAAATTACCGCGGAAAAACAATTCGTTGACAAAAAGCTTAG 1059
Query 888 GAGAAAGATAAAGAACCGAGAATCCGCAGCAAGATCACGGGCTCGGAAGCAAGCTCAAAC 947
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1060 GAGAAAGATTAAGAACCGAGAATCCGCAGCGAGATCACGGGCTCGAAAGCAAGCTCAAAC 1119
Query 948 TATGGAGCTTGAAGTTGAACATGAAAACTTAAAGAAAGCAT-ATGAAGAGCTACTAAAAC 1006
||||||| |||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 1120 TATGGAGGTTGAAGTTGAACTTGAAAACTTAAAGAAAG-ATTATGAAGAGCTACTAAAAC 1178
Query 1007 AACATGTAGAGATGCGGAAAAGGCAAATCGAACCGGGGATGCTTAACCTTCAAGGAGGAC 1066
||||||||||| |||||||||| ||||| ||||| || ||| ||| |||||| | | |||
Sbjct 1179 AACATGTAGAGTTGCGGAAAAGACAAATGGAACCAGGAATGATTAGCCTTCATGAACGAC 1238
Query 1067 CAGAGCGAAAGCTGAGGAGAACGAAATCGGACATCAAGTGA 1107
| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1239 CGGAGAGAAAGCTGAGGAGAACGAAATCGGACATCAAGTGA 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5