BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg915999

Length=708
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11250.1 | Symbols:  | Disease resistance protein (TIR-NBS-L...  87.9    1e-16


> AT5G11250.1 | Symbols:  | Disease resistance protein (TIR-NBS-LRR 
class) | chr5:3587978-3591960 REVERSE LENGTH=3570
Length=3570

 Score = 87.9 bits (47),  Expect = 1e-16
 Identities = 98/122 (80%), Gaps = 5/122 (4%)
 Strand=Plus/Plus

Query  174   AGAGCATATGTACGTATTTGAAGTCGAAGCAG-ATGTGACTTCCAGCGAGCTTGTCTTTG  232
             ||||||| |||||  ||| ||| |||||| || | |||||||||||||||||||||||||
Sbjct  3447  AGAGCATCTGTACACATTCGAAATCGAAG-AGAAGGTGACTTCCAGCGAGCTTGTCTTTG  3505

Query  233   AGTTCAAGATCAAGA--G-TAAGAATTGGAAGATAAAAGAATGTGGGGTATTCCAACTCT  289
             |||||||| || |||  | |||  | ||||||||   |||||| ||| ||  |||||| |
Sbjct  3506  AGTTCAAGGTCGAGAACGGTAACCACTGGAAGATTGGAGAATGCGGGTTACGCCAACTAT  3565

Query  290   CG  291
             ||
Sbjct  3566  CG  3567



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34309922401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5