BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916018

Length=1020
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18...   442    3e-123
  ATCG00340.1 | Symbols: PSAB | Photosystem I, PsaA/PsaB protein ...  89.8    5e-17 


> AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18036116-18040928 
FORWARD LENGTH=3159
Length=3159

 Score =  442 bits (239),  Expect = 3e-123
 Identities = 278/297 (94%), Gaps = 2/297 (1%)
 Strand=Plus/Plus

Query  96    GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC  155
             ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct  1812  GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC  1871

Query  156   TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG  215
             |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct  1872  TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG  1931

Query  216   GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATACTG  275
             |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1932  GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG  1991

Query  276   GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC  335
             |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct  1992  GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC  2051

Query  336   TTTCATGAAGGAGGG-GAAGAAGAAGAGCATGTTGGTGATTCTCGAGGAAGAGCCAG  391
             ||||||||||| ||| ||||||||||| |||| ||||||||||||||||||| ||||
Sbjct  2052  TTTCATGAAGG-GGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG  2107


 Score =  124 bits (67),  Expect = 1e-27
 Identities = 88/98 (90%), Gaps = 2/98 (2%)
 Strand=Plus/Plus

Query  1     ATGGAACACACGTATGCCGGTCCACGAAG-TGTTTCAATCATCGGTTTAAAGTCAGGAAC  59
             |||||||||| || ||| ||||||||  | | ||||||||||||||||||||||||||||
Sbjct  1690  ATGGAACACAGGTTTGCTGGTCCACG-TGCTATTTCAATCATCGGTTTAAAGTCAGGAAC  1748

Query  60    GCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG  97
             |||||||||||  |||||||||||||||||||| ||||
Sbjct  1749  GCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG  1786


> ATCG00340.1 | Symbols: PSAB | Photosystem I, PsaA/PsaB protein 
| chrC:37375-39579 REVERSE LENGTH=2205
Length=2205

 Score = 89.8 bits (48),  Expect = 5e-17
 Identities = 48/48 (100%), Gaps = 0/48 (0%)
 Strand=Plus/Plus

Query  520   AGTTTTCCTTGCGATGGTCCGGGACGAGGTGGTACTTGTGATATTTCG  567
             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1666  AGTTTTCCTTGCGATGGTCCGGGACGAGGTGGTACTTGTGATATTTCG  1713



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49982976265


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5