BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916046
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61420.1 | Symbols: | BSD domain (BTF2-like transcription f... 1208 0.0
AT1G55750.1 | Symbols: | BSD domain (BTF2-like transcription f... 915 0.0
AT1G73360.1 | Symbols: HDG11, EDT1, ATHDG11 | homeodomain GLABR... 180 2e-44
> AT3G61420.1 | Symbols: | BSD domain (BTF2-like transcription
factors, Synapse-associated proteins and DOS2-like proteins)
| chr3:22727040-22731954 REVERSE LENGTH=2129
Length=2129
Score = 1208 bits (654), Expect = 0.0
Identities = 700/723 (97%), Gaps = 0/723 (0%)
Strand=Plus/Plus
Query 1 GACCATGGGATCCAGCGCTATGGCACCAATGACGTTGTTGAACCACTGAACGACCAGCTT 60
||||| |||||||||||| |||||||||||||| || ||||||||| ||| |||||||||
Sbjct 1077 GACCACGGGATCCAGCGCGATGGCACCAATGACATTATTGAACCACAGAATGACCAGCTT 1136
Query 61 AGGAGGTCACTTTTACAAGATCTTAATCGTCATGCTGCTGTTGTATTGGAAGGAAGATGC 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAGAGGTCACTTTTACAAGATCTTAATCGTCATGCTGCTGTTGTATTGGAAGGAAGATGC 1196
Query 121 ATCGATGTTGAGTCAGGAGATACGAGAATTGTTGCAGAGGCTCTCACACGGGTGAAACAA 180
||| ||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1197 ATCAATGTTCAGTCTGAAGATACGAGAATTGTTGCAGAGGCTCTCACACGGGCGAAACAA 1256
Query 181 GTAAGCAAAGCTGATGGTGAAATCACCAAGGACGCTAATCAGGAGAGGTTGGAGAGAATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GTAAGCAAAGCTGATGGTGAAATCACCAAGGACGCTAATCAGGAGAGGTTGGAGAGAATG 1316
Query 241 TCCCGTGCAACAGAAATGGAGGATCTTCAAGCACCACAAAACTTCCCATTAGCACCACTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TCCCGTGCAACAGAAATGGAGGATCTTCAAGCACCACAAAACTTCCCATTAGCACCACTC 1376
Query 301 TCTATCAAGGACCCTCGTGATTACTTTGAATCTCAACAAGGAAACATCCTCAGTGAACCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TCTATCAAGGACCCTCGTGATTACTTTGAATCTCAACAAGGAAACATCCTCAGTGAACCC 1436
Query 361 AGAGGAGCAAAGGCGTCAAAGAGAAATGTCCATGAAGCTTATGGATTACTAAAAGAATCC 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1437 AGAGGAGCAAAGGCGTCAAAAAGAAATGTCCATGAAGCTTATGGATTACTAAAAGAATCC 1496
Query 421 ATTTTGGAGAATAGAATGACGGGATTAAGTGATCCTTTGATTAAACCTGAAGTTTCCTTT 480
||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1497 ATTTTGGTGATTAGAATGACGGGATTAAGTGATCCGTTGATTAAACCTGAAGTTTCCTTT 1556
Query 481 GAGGTTTTCAGTTCGTTGACCCGAACTATCTCAACTGCCAAAAATATTGTTGGGAAGAAC 540
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1557 GAGGTTTTCAGTTCGTTGACCCGAACTATCTCAACTGCCAAAAATATTCTCGGGAAGAAC 1616
Query 541 CCGCGAGAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGAAGTTATACATCAC 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 CCGCAAGAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGAAGTTATACATCAC 1676
Query 601 TGGACATCAATACAGGAATTACTGAGACATTTTTGGTCATCTTACCCAATAACAACGACA 660
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TGGACATCAATACAAGAATTAGTGAGACATTTTTGGTCATCTTACCCAATAACAACGACA 1736
Query 661 TATCTTAATACCAAGGTTGCTAAACTGAAGGATGCAATGTCCAATACTTATTCACTACTC 720
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TATCTTAGTACCAAGGTTGGTAAACTGAAGGATGCAATGTCCAATACTTATTCACTACTC 1796
Query 721 GAT 723
|||
Sbjct 1797 GAT 1799
> AT1G55750.1 | Symbols: | BSD domain (BTF2-like transcription
factors, Synapse-associated proteins and DOS2-like proteins)
| chr1:20840195-20845182 REVERSE LENGTH=2077
Length=2077
Score = 915 bits (495), Expect = 0.0
Identities = 648/721 (90%), Gaps = 14/721 (2%)
Strand=Plus/Plus
Query 1 GACCATGGGATCCAGCGCT-ATGGCACCAAT-GACGTTGTTGAACCACTGAACGACCAGC 58
||||| ||||||||||| | |||||||| || || ||||||||||||| || || |||
Sbjct 945 GACCACGGGATCCAGCG-TGATGGCACC-ATGGATGTTGTTGAACCACAAAATGATCAGT 1002
Query 59 TTAGGA-GGTCACTTTTACAAGATCTTAATCGTCATGCTGCTGTTGTATTGGAAGGAAGA 117
||| | | |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1003 TTA-AACGATCACTTTTGCAAGATCTTAATCGTCATGCTGCTGTTGTATTGGAAGGCAGA 1061
Query 118 TGCATCGATGTTGAGTCAGGAGATACGAGAATTGTTGCAGAGGCTCTCACACGGGTGAAA 177
|||| ||||||||||||| |||||| || |||||||||||||||||||||||||| |||
Sbjct 1062 AGCATTGATGTTGAGTCAGAAGATACAAGGATTGTTGCAGAGGCTCTCACACGGGTTAAA 1121
Query 178 CAAGTAAGCAAAGCTGATGGTGAAATCACCAAGGACGCTAATCAGGAGAGGTTGGAGAGA 237
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||
Sbjct 1122 CAAGTAAGCAAAGCTGATGGTGAAACCACCAAGGACGCTAATCAGGAGAGATTGGAAAGA 1181
Query 238 ATGTCCCGTGCAACAGAAATGGAGGATCTTCAAGCACCACAAAACTTCCCATTAGCACCA 297
|||||||| | | ||| ||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1182 ATGTCCCGGGTAGCAGGAATGGAGGATCTTCAAGCACCACAAAATTTCCCATTGGCGCCG 1241
Query 298 CTCTCTATCAAGGACCCTCGTGATTACTTTGAATCTCAACAAGGAAACATCCTCAGTGAA 357
|| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 1242 CTTTCTATCAAGGATCCTCGTGATTACTTTGAATCTCAACAAGGAAACGTCCTCAATGTA 1301
Query 358 CCCAGAGGAGCAAA-GGCGTCAAAGAGAAATGTCCATGAAGCTTATGGATTACTAAAAGA 416
|||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1302 CCCAGAGGAGCAAAGGGC-TTGAAGAGAAATGTCCATGAAGCTTATGGATTACTAAAGGA 1360
Query 417 ATCCATTTTGGAGAATAGA-ATGACGGGATTAAGTGATCCTTTGATTAAACCTGAAGTTT 475
||||||||| |||| |||| | || |||||||||||||| |||||||| ||||||||||
Sbjct 1361 ATCCATTTTAGAGATTAGAGCT-ACAGGATTAAGTGATCCGTTGATTAAGCCTGAAGTTT 1419
Query 476 CCTTT-GAGGTTTTCAGTTCGTTGACCCGAACTATCT-CAACTGCCAAAAATATTGTTGG 533
|||| ||||||||||||||||| |||||||| || | ||||||| ||||||||| |||
Sbjct 1420 -CTTTCGAGGTTTTCAGTTCGTTAACCCGAACCAT-TGCAACTGCTAAAAATATTAATGG 1477
Query 534 GAAGAACCCGCGAGAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGAAGTTAT 593
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1478 GAAGAACCCACGAGAGAGCTTTCTGGACAGATTACCAAAGTCCACTAAGGATGAAGTTCT 1537
Query 594 ACATCACTGGACATCAATACAGGAATTACTGAGACATTTTTGGTCATCTTACCCAATAAC 653
||| || |||||||||||||| |||||||||| |||||||||||||||||| || |||||
Sbjct 1538 ACACCATTGGACATCAATACAAGAATTACTGAAACATTTTTGGTCATCTTATCCGATAAC 1597
Query 654 AACGACATATCTTAATACCAAGGTTGCTAAACTGAAGGATGCAATGTCCAATACTTATTC 713
||| ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1598 AACCACATATCTTCATACCAAGGTTGGTAAACTGAAGGATGCAATGTCCAATACATATTC 1657
Query 714 A 714
|
Sbjct 1658 A 1658
> AT1G73360.1 | Symbols: HDG11, EDT1, ATHDG11 | homeodomain GLABROUS
11 | chr1:27578696-27582521 REVERSE LENGTH=3067
Length=3067
Score = 180 bits (97), Expect = 2e-44
Identities = 107/112 (96%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 725 CGTCGGCGGAAGTGGTAATGGAAGCGGCGGTGACGGTGGTGGTAGTCAACATCACGACGG 784
||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 719 CGTCGGCGGAAGTGGTAGTGGAAGCGGCGGAGACGGTGGTGGTAGTCATCATCACGACGG 778
Query 785 CTCTGAAACTGATAGGAAGAAGAAACGTTATCATCGTCACACCTCTCAACAG 836
|||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 779 CTCTGAAACTGATAGGAAGAAGAAACGTTACCATCGTCACACCGCTCAACAG 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5