BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916055
Length=2970
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46470.1 | Symbols: RPS6 | disease resistance protein (TIR-N... 1186 0.0
AT5G46450.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 1157 0.0
AT1G31540.2 | Symbols: | Disease resistance protein (TIR-NBS-L... 161 3e-38
> AT5G46470.1 | Symbols: RPS6 | disease resistance protein (TIR-NBS-LRR
class) family | chr5:18842701-18849741 FORWARD LENGTH=4849
Length=4849
Score = 1186 bits (642), Expect = 0.0
Identities = 1734/2245 (77%), Gaps = 139/2245 (6%)
Strand=Plus/Plus
Query 18 ttcttcttcttcttcttcttctCGCAAATGGGAAAATGACCTCTTCCTGAGCTTCAGCGG 77
||||||||| || || ||||||||||| ||| | || || | |||| ||| ||||||||
Sbjct 6 TTCTTCTTCCTCCTCCTCTTCTCGCAATTGGTCATATCACGTTTTCCCGAGTTTCAGCGG 65
Query 78 AGAAGACATCCGCAAAAGC-TTCCTCAGTCACTTTCAT-AAGGAGCTTGATCA-GAAACC 134
|||||| ||||||| | | ||||| || ||||||| | || || || ||| | |||||
Sbjct 66 AGAAGATGTCCGCAACA-CATTCCTTAGCCACTTTC-TAAAAGAACTGGAT-AGGAAACT 122
Query 135 GATCCTTGT-TTTCAAAGAAAACGAGATCAAGAG-AGGCATATCCCTCGGTCCC-AAGCT 191
|||| || | ||||||||| || |||||| |||| || || || || | |||| || ||
Sbjct 123 GATCATT-TCTTTCAAAGACAATGAGATCGAGAGAAGCCA-GTCACTTGATCCCGAA-CT 179
Query 192 AAAAC-GGGCGATTAGGGATTCAAGAATTGCAGTCGTTATCTTTTCCAGAAA-GTATGCC 249
|||| || |||||| |||| |||||||| || ||| | || |||| ||| ||||||
Sbjct 180 TAAACATGG-GATTAGAAATTCCAGAATTGCGGTGGTTGTGTTCTCCA-AAACCTATGCC 237
Query 250 TCTTCAAGCTGGTGTCTCAACGAGTTGCTGGAAATTGTGAGATGCAAGAAAGAGTTTAGT 309
|||||||||||||| || |||||| | ||||| ||||||| |||||||||||||||| |
Sbjct 238 TCTTCAAGCTGGTGCCTTAACGAGCTACTGGAGATTGTGAAATGCAAGAAAGAGTTTGGC 297
Query 310 CAAGTGGTGATTCCCATTTTCTTCCGTTTGGATCCTA-CCCATGTAAGGAAACAGACCGG 368
||| | ||||| |||||||||| | ||||||||| | ||||||| ||||||||||||||
Sbjct 298 CAACTTGTGATACCCATTTTCTACAATTTGGATCC-ATCCCATGTGAGGAAACAGACCGG 356
Query 369 AGTCTTT-GGAATGAAT-TTTGAAAAAACTTGCC-ACAACAAAACAG-AGAAAATGAAGA 424
|| |||| |||| | || |||||||| || |||| | || ||||||| || | ||| |
Sbjct 357 AGACTTTGGGAA-G-ATCTTTGAAAAGACATGCCGA-AATAAAACAGTGGATGA-GAAAA 412
Query 425 TTCGATGG-AGGAGAGCTTTGACCGAAGTAGCTAATATCATCGGGTATCATTCTTCTGTG 483
| |||||| |||| |||||||||||| |||||||||||| | || ||||| | | |||
Sbjct 413 TCCGATGGAAGGA-AGCTTTGACCGATGTAGCTAATATCCTTGGATATCA-T-AT-TGTT 468
Query 484 ACATGCAAAAACGAAGCAAAAATGATTGAGGCCATCATCGCTGATGTTTTGGGTGAACTA 543
|| || | |||||||||| ||||| || | ||| | |||| |||||||| || |
Sbjct 469 ACCTGGGATAACGAAGCAAGCATGATCGAAGAAATCGCCAATGATATTTTGGGTAAAAT- 527
Query 544 G-CTTTAACGCCATCAAAGGATTACGAGGACTTTGTCGGCATCGAA-ACTCATATCGCAA 601
| | || | |||||||| |||| |||||||| ||||| || ||| | ||||||| |||
Sbjct 528 GAATATATCTCCATCAAATGATTTTGAGGACTTGGTCGGTATTGAAGA-TCATATCACAA 586
Query 602 AAATGAACTT-TTTGTTGCATTTGGAAGC-GAAGGAGGTGAGGATGGTTGGGATATGTGG 659
| ||| | || ||| |||| |||||| | | |||| ||||||||||| |||||||| ||
Sbjct 587 AGATG-AGTTCATTGCTGCACTTGGAATCTG-AGGAAGTGAGGATGGTCGGGATATGGGG 644
Query 660 TCCCTCCGGAATTGGTAAGACTTCCATTGCAAGAGTTCTATTCAACCGACTCTCCCGTC- 718
|||||| |||||||| || || |||||||||||| |||||| | |||||||| |||
Sbjct 645 TCCCTCGGGAATTGGCAAAACGACCATTGCAAGAGCTCTATTTAGTCGACTCTCTTGTCA 704
Query 719 GCTTCAGATGTAATGTTTTCATTGATAGGGCTTTTC-TGTCTAAGAGTATGGAACATTAT 777
| |||| | ||| |||||||||||| | || ||||| | ||||||||||||||| |||
Sbjct 705 GTTTCA-AAGTAGTGTTTTCATTGACAAGG-TTTTCATATCTAAGAGTATGGAAGTTTAC 762
Query 778 AGTGGAGCCAATCTGGGCGACTATAACATGAAGTTGCATTTACAAGGAATTTTTCTTTCA 837
|||||||| ||||| | |||||||||||||||||||| || ||| || ||||| |
Sbjct 763 AGTGGAGCTAATCTTGTTGACTATAACATGAAGTTGCACTTGCAAAGAGCCTTTCTAGCT 822
Query 838 GAAATTTTGGGGAAAAGGGACATTAAAATATGTCATTTAGGTGCAGTGGGAGAGA-GCCT 896
|||||||| | |||| ||||| | ||| || ||| |||||||| ||| | ||| | |
Sbjct 823 GAAATTTTTGACAAAAAGGACA-T-AAAGAT-ACATGTAGGTGCAATGGAAAAGATG-GT 878
Query 897 AAAGAACCACAAAGTTCTTATCTTTATAGATGATTTGGAAAATCAAG-TCGT-CTTAGAT 954
|||| ||| |||| ||| ||| |||| |||||||| || |||||| | || | |||||
Sbjct 879 AAAGCACCGGAAAGCTCTCATCGTTATTGATGATTTAGATGATCAAGAT-GTGC-TAGAT 936
Query 955 ACCTTGGCAGG-TCACACTGATTGGTTTGGATGTGGGAGTAGAGTCGTTGTGATTACA-A 1012
| || || || ||| ||| | ||||||||| ||||||||||| || ||||| ||||| |
Sbjct 937 GCTTTAGC-GGATCAAACTCAATGGTTTGGAAGTGGGAGTAGAATCATTGTGGTTACAGA 995
Query 1013 AACATATGCATCTCCTAAAAGCCCA-CGGGATTGGTCGTATCTATGAAGTTC-CTCTCCC 1070
|| ||| |||| | ||| ||| | | |||||| || || || ||| || ||||||
Sbjct 996 AA-ATAAGCATTTTTTAAGGGCCAATC-GGATTGATCACATTTA-CAAGGTCTGTCTCCC 1052
Query 1071 ATCTGATGCTCTTTCCCTTCAAATATTATGTCAATATGCCTTTAGGCAA-AA-CCATCCA 1128
|||| |||| || | ||| | || || |||| | ||| |||| | || || | |||
Sbjct 1053 ATCTAATGCGCTGGCTCTTGAGATGTTTTGTCGTTCTGCTTTTAAG-AAGAATTC-TCCT 1110
Query 1129 CCTGATG-GTTTTATGGAGCTTGCTTCCGAAACTGCATTGCGTGCGGGTAATCTTCCATT 1187
||||||| |||| |||||||| |||| ||| |||||||||||| ||||||||||| ||
Sbjct 1111 CCTGATGACTTTT-TGGAGCTTTCTTCTGAAGTTGCATTGCGTGCTGGTAATCTTCCTTT 1169
Query 1188 GGTTCTTAATGTTTTGGGTTCGCATTTGCGGGGTAGAGACAAAAAATACTGGATGGATAT 1247
|| || || || |||||||| |||| ||||| | | ||||| |||||||| |||||
Sbjct 1170 GGGCCTGAACGTATTGGGTTCAAATTTACGGGGCATAAACAAAGGTTACTGGATAGATAT 1229
Query 1248 GTTGTTGAGGTTTGGAAAAGGTCAACATGGTAACATTGAGG-AGACACTAA-AGTTGAGC 1305
| | |||| || ||||| |||| || || | || | ||||||| || | |||
Sbjct 1230 GCTACCGAGGCTT---CAAGGTTTGGATGGAAAAATAG-GGAAAACACTAAGAG-TCAGC 1284
Query 1306 TACAATGGGTTAAAT-A-A-AAACGATGAAGCAATATTTCGTCACATTGCATGT-TTCTT 1361
|| ||||||| ||| | | ||| |||||||||||||||||||||||||||||| || ||
Sbjct 1285 TATGATGGGTTGAATAACAGAAAAGATGAAGCAATATTTCGTCACATTGCATGTATT-TT 1343
Query 1362 CAATGGTGAGGAAGT-AGATGATATCAAG-TCACTACTAGCAGATAGTGATTTGGATGTT 1419
|||||||||| |||| || ||| ||||| | | |||||||| ||||| | |||||||||
Sbjct 1344 CAATGGTGAGAAAGTCAG-TGACATCAAACT-ATTACTAGCAAATAGTAACTTGGATGTT 1401
Query 1420 AATATGGGGATTAAAAACCTAGTTGATAAATCCCTTAT-TAAAGAAACG-TGCAATAC-C 1476
||||| ||| | |||||||| ||||||| ||||||||| | |||| | | |||||| |
Sbjct 1402 AATATCGGGCTAAAAAACCTTGTTGATAGATCCCTTATCTGT-GAAA-GATTCAATACTC 1459
Query 1477 GTGGAGATGCACTCTTTGATACAAGAAATGGGCAAGGAGATTAACCGTACACAGTCTAGT 1536
||||||||||||||||| |||||||| |||| ||||||||| |||||| ||||| | |
Sbjct 1460 -TGGAGATGCACTCTTTGCTACAAGAATTGGGTAAGGAGATTGTCCGTACTCAGTCCAAT 1518
Query 1537 GAGCCTGGAGGACGACAATTCCTTCTGGATTCGAAAGATGTTTTC-ACTATACTTGAAGA 1595
||||||||| ||| | |||||| |||||| ||| ||| ||| | | | |||||||| |
Sbjct 1519 CAGCCTGGAGAACGGGAGTTCCTTGTGGATTTGAAGGATATTTGCGA-TGTACTTGAACA 1577
Query 1596 TAACACTGGTACTGAA-AACGTTTTAGGTATATCATTGGATATAGATGAGACTGATGAAC 1654
||||||||||||| || || |||||||||||| |||||||||||||||||||||| ||||
Sbjct 1578 TAACACTGGTACT-AAGAAGGTTTTAGGTATAACATTGGATATAGATGAGACTGACGAAC 1636
Query 1655 TGCATATTCATGAGAG-TGCCTTCAAAGAGA-TGCGTAATCTTCAATTTCTAAGGATTTC 1712
||||||| |||||||| | ||||||||| || ||| ||||| | ||||||| ||||
Sbjct 1637 TGCATATACATGAGAGCT-CCTTCAAAG-GAATGCACAATCTCCTTTTTCTAAAAATTTA 1694
Query 1713 TACCAAG-----G-A---GAACAAAAAAGCTAGATTGAACTTACCAGAA-GACTTCGATT 1762
||| ||| | | ||| ||||||| ||||| | ||||||| ||| | |||||| |
Sbjct 1695 TACTAAGAAATTGGACCAGAAAAAAAAAGTTAGATGGCACTTACCGGAACG-CTTCGACT 1753
Query 1763 TTTTACCAC-CTA-AGCTCAGATTACTGAG-TTGGAGAGGTTACCCG-CTTAGATCTATG 1818
||| || | ||| | || |||||| |||| || || || | |||| | | || | |
Sbjct 1754 ATTTGCC-CTCTAGA-CTTAGATTATTGAGGTTTGACAGAT-ACCCATCGAA-ATGTCTT 1809
Query 1819 CCATCTACATTTTG-TCCTCAATCCCTTGTTAAGCT-CGAAATG-AGGTACAGCTAT-TT 1874
|| |||| | ||| |||| || ||| |||||||| | ||||| || | ||| | ||
Sbjct 1810 CCTTCTA-ACTTTCATCCTGAAAACCTGGTTAAGCTTC-AAATGCAGC-AGAGCAAACTT 1866
Query 1875 CGAGATGCTGTGGGATGGAGTTCAACCACTTACTACG-CTCAAGAAGATGGATTTGTGGG 1933
|||| ||||||||| |||||||| ||||| | | | |||| ||| |||||||| |||
Sbjct 1867 -GAGAAGCTGTGGGACGGAGTTCATTCACTTGC-AGGGCTCAGGAATATGGATTTACGGG 1924
Query 1934 GATCCAAAAACCTGAAAGAAATCCCTGATCTTTCAGTGGCCACAAATCTCGAGACACTTA 1993
|||| | |||||||||||||||||| ||||||||| ||||||| ||||| || |||||||
Sbjct 1925 GATCTAGAAACCTGAAAGAAATCCCAGATCTTTCAATGGCCACTAATCTAGAAACACTTA 1984
Query 1994 ATTT-AGCGGCTTGCTCGAGTTTGGTGGAGCTTCATTCCTCTGTGCAGTATCTCAATAAA 2052
| | ||| | |||||||||||||||||| |||| ||| ||| | ||||| || |||||
Sbjct 1985 AACTCAGCAG-TTGCTCGAGTTTGGTGGAACTTCCTTCGTCTATTCAGTACCTGAATAAG 2043
Query 2053 CTGAAGAGATT-GAACTTGTCATATTGCGAAAATCTGGAGACTCTTCC-TACCA-ACTTC 2109
||||| |||| | || ||||||| ||||| || |||||||| |||| | | | ||
Sbjct 2044 CTGAAT-GATTTGGACATGTCATACTGCGATCATTTGGAGACTATTCCCT-CTGGAGTT- 2100
Query 2110 AACCTCCAAGCTCTGGA-CTGCCTCAATCTCTTTGGATGCTCAAGCAT-AAAGAGCTTTC 2167
|||||| || |||| || | | ||||||||| |||||||||| | | ||| || ||||
Sbjct 2101 AACCTCAAATCTCTCGATC-GTCTCAATCTCAGTGGATGCTCACGGTTGAAA-AGTTTTC 2158
Query 2168 CTGATAT-CTCAACCAACATCTCAT 2191
||| || | |||||||||||||||
Sbjct 2159 TTGACATAC-CAACCAACATCTCAT 2182
Score = 200 bits (108), Expect = 6e-50
Identities = 396/527 (75%), Gaps = 52/527 (10%)
Strand=Plus/Plus
Query 2454 TCTTCCATATGATCATTTCCCAA-GAGTCGAGCTCAATTTCCTCGACTGCTTCAACTTGG 2512
||||||| |||| ||||| ||| | ||| ||||||| ||| || |||||||||| || |
Sbjct 2730 TCTTCCAGCTGATAATTTCTCAACG-GTCAAGCTCAACTTCATCAACTGCTTCAAGTTAG 2788
Query 2513 ATC-AAGAAGCTCTTCTTCAGCAA-CAATCAGTTTTCAAG-AGACTAAT-CTTGCCAGCT 2568
||| || ||||||| |||| || ||| || |||||| | | ||| || | | |||
Sbjct 2789 ATCTAA-CAGCTCTTATTCA-AAACCAAACATTTTTCATGCA-ACTGATAC-TAACAG-- 2842
Query 2569 GATCAAGAAGTGCCTTCATATTTCACTCACCGTACTAGT-GGGACCTCTATGACCAATAT 2627
| | ||||||||||||||||||||||||||||||| ||| |||| |||||| | |
Sbjct 2843 G-TGAAGAAGTGCCTTCATATTTCACTCACCGTACCAGTGGGGA-CTCTAT---C----T 2893
Query 2628 CCCTCTACTTCAGACATCTCTCTCT--CAACCATTCTTCAGGTTTT-TGGCTTGCGCGGT 2684
|| |||| || |||||||| | | ||| ||||||||| ||||| || |||| | ||
Sbjct 2894 -CC-CTACCTC--ACATCTCTGTATGCCAATCATTCTTCA-GTTTTAGGGGTTGCACCGT 2948
Query 2685 GGTAGAT-TCTGAAAT-TATTTCCATAGATC-ATATTTCATTTCTCATCGAGGTAAATTG 2741
| | ||| || | | | | |||||| | ||| | |||||||| ||| || ||| |||
Sbjct 2949 GATTGATGTC-G-ATTCTTTTTCCACA-ATCTCTGTTTCATTTGACATTGAAGTATGTTG 3005
Query 2742 TCAGTTCATAGACGGACTT-GGGAACCACTTTGGTTCTGCTTATTGGCCTATG-TACTTC 2799
|| |||||||||| || || ||||||||||||| |||| || ||| || | | ||||||
Sbjct 3006 TCGGTTCATAGACAGA-TTCGGGAACCACTTTGATTCTACTGATTTTCC-AGGATACTTC 3063
Query 2800 GCGGCAGCACCGTTGGGTAGTCATCTTGTTATATTCAACTG-TAGCTTACCTCTAAACGG 2858
|| || ||||||| ||||||| ||| | || |||| || || ||| | ||||
Sbjct 3064 ATAACAACAAAGTTGGGTGGTCATCTGGTTGTCTTTGACTGTTATTTTCCCT-TTAACGA 3122
Query 2859 TG-A-CTA-TGCTTATCT--A-GCTAAACGTC-ACTACGATCACGTGGATATACAGTTTC 2911
| | || | ||| ||| | | | || || |||||||||||||||||||||||||||
Sbjct 3123 AGAATTTACTACTTTTCTGGATGGTCAA-TTCAACTACGATCACGTGGATATACAGTTTC 3181
Query 2912 GTCTCACTGA-TGACTACTCTCAGATCAAATTAAAAGGATGTGGTAT 2957
||||||| || |||| |||||||| ||||| |||||||||| |||||
Sbjct 3182 GTCTCAC-GAATGACAACTCTCAGCTCAAACTAAAAGGATGCGGTAT 3227
> AT5G46450.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr5:18835618-18839546 FORWARD LENGTH=3372
Length=3372
Score = 1157 bits (626), Expect = 0.0
Identities = 1730/2248 (77%), Gaps = 135/2248 (6%)
Strand=Plus/Plus
Query 20 cttcttcttcttcttcttctCGCAAATGGGAAAATGACCTCTTCCTGAGCTTCAGCGGAG 79
||||||| || || ||||||||||| ||| | |||| | |||| |||||||| ||||
Sbjct 5 CTTCTTCGTCCTCCTCTTCTCGCAATTGGTCATATGATGTTTTCCCAAGCTTCAGTGGAG 64
Query 80 AAGACATCCGCAAAAGC-TTCCTCAGTCACTTTCAT-AAGGAGCTTGATCAGAAACCGAT 137
|||| ||||||||| | |||||||| ||||||| | | |||||| || | |||| ||||
Sbjct 65 AAGATGTCCGCAAAA-CATTCCTCAGCCACTTTC-TCAGGGAGCTGGAACGGAAATCGAT 122
Query 138 CCTTGTTTTCAAAGAAAACGAGATCAAGAG-AGGCATATCCCTCGGTCCCA-AGCTAAAA 195
| || ||||||||| || ||||| |||| || || || | | |||| |||| |
Sbjct 123 CATTACTTTCAAAGACAATGAGATGGAGAGAAGCCA-GTCAAT-AGCCCCAGAGCTTGTA 180
Query 196 CG-GGCGATTAGGGATTCAAGAATTGCAGTCG-TTATCTTTTCCAGAAAGTATGCCTCTT 253
| |||||||| |||||||| |||||||| | || | || || | ||| || |||||||
Sbjct 181 -GAGGCGATTAAAGATTCAAGGATTGCAGT-GATTGTGTTCTCTAAAAACTACGCCTCTT 238
Query 254 CAAGCTGGTGTCTCAACGAGTTGCTGGAAATTGTGAGATGCAAGAAAGAGTTTAGTCAAG 313
||||||||||||| || ||| || | || ||| || ||||||| ||| | ||| | | ||
Sbjct 239 CAAGCTGGTGTCTAAATGAGCTGTTAGAGATTATGCGATGCAACAAATA-TTTGGGCCAG 297
Query 314 -TGGTGATTCCCA-TTTTCTTCCGTTTGGATCCTACCCATGTAAGGAAACAGACCGGAGT 371
|||| | ||| | |||| | |||||||||| | ||| | |||||||| | ||||
Sbjct 298 CAAGTGA-TACCAGTCTTCTACTATTTGGATCCTTCTCATCTTCGGAAACAGTCGGGAGA 356
Query 372 CTTTGGA-ATGAATTTTGAAAAA-ACTTGCCACAACAAAACAGAGAAAATGAAGATTCGA 429
|||||| | | | ||| ||||| |||||||| ||| |||| ||| || |||| | || |
Sbjct 357 GTTTGGAGAGGCA-TTT-AAAAAGACTTGCCAGAACCAAACTGAGGAAGTGAAAAATC-A 413
Query 430 -TGG-AGGAGAGCTTTGACCGAAGTAGCTAATATCATCGGGTATCATTCTTCTGTGACAT 487
||| || | ||| ||||| || || | || ||| |||| |||||||| | | || |
Sbjct 414 GTGGAAGCA-AGCGTTGACTGATGTTTCAAACATCCTCGGATATCATTC-TAAG-AAC-T 469
Query 488 GCAAAAACGAAGCAAAAATGATTGAGGCCATCAT-C-GCTGATGTTTTGGGTGAACT-AG 544
|||| | |||||| | ||||||||| | ||| | | | | || |||| ||| |||| ||
Sbjct 470 GCAATAGCGAAGCTACAATGATTGAAGAAATC-TCCAG-TCATATTTTAGGTAAACTGAG 527
Query 545 CTTTAACGCCATCAAAGGATTACGAGGACTTTGTCGGCATCGAAA-CTCATATCGCA-AA 602
|||||| |||||||| |||| ||||| ||||| |||||| ||| |||||||| | ||
Sbjct 528 -TTTAACTCCATCAAATGATTTTGAGGAATTTGTTGGCATC-AAAGATCATATCG-AGAA 584
Query 603 AATGAACTTTTTGTTGCATTTGGAAGC-GAAGGAGGTGAGGATGGTTGGGATATGTGGTC 661
||| || ||||||||||||||| | | | || |||||||||||||||||||| |||
Sbjct 585 GGTGAGGTTGTTGTTGCATTTGGAATCTG-ACGAAGTGAGGATGGTTGGGATATGGGGTA 643
Query 662 CCTCCGGAATTGGTAAGACTTCCATTGCAAGAG-TTCTATTCAACCGA-CTCTCCCGTC- 718
|||| ||||| ||||||||| |||||||||||| || |||| | | ||||| |||
Sbjct 644 CCTCGGGAATCGGTAAGACTACCATTGCAAGAGCTT-TATT-TAGTAATCTCTCTAGTCA 701
Query 719 GCTTCAGATGTAATGTTTTCATTGATAGGGCTTTTC-TGTCTAAGAGTATGGAACATTAT 777
| |||| | ||| ||||| ||| || ||||| |||| | ||||||||||||||| |||
Sbjct 702 GTTTCA-AAGTAGTGTTTACATAGACAGGGC-TTTCATATCTAAGAGTATGGAAGGTTAC 759
Query 778 AGTGGAGCCAATCTGGGCGACTATAACATGAAGTTGCATTTACAAGGAATTTTTCT-TTC 836
|| ||||||||| | ||||||||||||||||||| ||| | || || ||| || ||
Sbjct 760 GGTCGAGCCAATCCAGATGACTATAACATGAAGTTGCGTTTGCGAGAAAATTTCCTGTT- 818
Query 837 AGAAATTTTGGGGAAAAGGGACATTAAAATATGTCATTTAGGTGCAGTGGGAGAGAGCCT 896
||||||||||| |||| | ||| | | | | | | |||||| ||| ||| || ||
Sbjct 819 TGAAATTTTGGGCAAAAAGAACA-T--GA-A-G--A--TCGGTGCAATGGAAGAAAGGCT 869
Query 897 AAAGAACCACAAAGTTCTTATCTTTATAGATGATTTGGAAAATCAAG-TCGT-CTTAGAT 954
||| | || |||||||||||| |||| ||||||||||| |||||| | || | |||||
Sbjct 870 GAAGCATCAAAAAGTTCTTATCATTATTGATGATTTGGATGATCAAGAT-GTGC-TAGAT 927
Query 955 ACCTTGGCAGGTCA-CACTGATTGGTTTGGATGTGGGAGTAGAGTCGTTGTGATTACAAA 1013
|||| | ||| | ||| | ||||||||| ||||||||||| | ||||| |||||||
Sbjct 928 GCCTTAGTGGGT-AGAACTCAATGGTTTGGAAGTGGGAGTAGAATAATTGTGGTTACAAA 986
Query 1014 ACATATGCATCTCCTAAAAGCCCACGGGATTGGTCGTATCTATGAAGTTCC--TCTCCCA 1071
| | | ||| || ||| ||||| ||||||| || | | || | || || |||||||
Sbjct 987 AAACAAACATTTCTTAAGGGCCCATGGGATTGATCATGTTTACG-AG-GCCTGTCTCCCA 1044
Query 1072 TCTGATGCTCTTTCCCTTCAAATATTATGTCAATATGCCTTT-AGGCAA-AA-CCATCCA 1128
||||| | ||| | ||| | || || |||| ||||| |||| ||| || || | ||||
Sbjct 1045 TCTGAAGAACTTGCTCTTGAGATGTTTTGTCGATATG-CTTTCAGG-AAGAATTC-TCCA 1101
Query 1129 CCTGATGGTTTTATGGAGCTTGCTTCCGAAACTGCATTGCGTGCGGGTAATCTTCCATTG 1188
||||||||||||||||||||| |||| ||| ||||||||| || ||||||||||| |||
Sbjct 1102 CCTGATGGTTTTATGGAGCTTTCTTCTGAAGTTGCATTGCGCGCTGGTAATCTTCCTTTG 1161
Query 1189 GTTCTTAATGTTTTGGGTTCGCATTTGCGGGGTAGAGACAAAAAATACTGGATGGATATG 1248
| |||||| |||||||||||| || | |||||||| |||| | | ||||||||||||||
Sbjct 1162 GGTCTTAAAGTTTTGGGTTCGTATCTACGGGGTAGGGACATAGAGGACTGGATGGATATG 1221
Query 1249 TTGTTGAGGTTTGGAAAA-GGTCAACATGGTAACATTGAGGAGACACTAA-AGTTGAGCT 1306
|| |||| || |||| | | | |||| || |||||| ||||||||| || | ||||
Sbjct 1222 ATGCCGAGGCTT-CAAAATGATTTAGATGGGAAAATTGAGAAGACACTAAGAG-TCAGCT 1279
Query 1307 ACAATGGGTT--A-AATAAAAACGATGAAGCAATATTTCGTCACATTGCATGT-TTCTTC 1362
|| |||| || | || ||||| |||||||||||||||||||||||||||||| || |||
Sbjct 1280 ACGATGGATTAAACAACAAAAAGGATGAAGCAATATTTCGTCACATTGCATGTCTT-TTC 1338
Query 1363 AATGGTGAGGAAGTAGATGATATCAAGTCACTACTAGCAGATAGTGATTTGGATGTTAAT 1422
||||||||| ||||| |||| ||||||| || |||||||| ||||| ||||||||||||
Sbjct 1339 AATGGTGAGAAAGTAAATGACATCAAGTTGCTTCTAGCAGAGAGTGACTTGGATGTTAAT 1398
Query 1423 ATGGGGATTAAAAA-CCTAGTTGATAAATCCCT--TATTA--AAGAAACGTGCAATACCG 1477
|| ||| ||||||| ||| |||||||| || || |||| |||| | | | | |||
Sbjct 1399 ATTGGG-TTAAAAAACCTTGTTGATAAGTCTCTCATATTTGTAAGAGA-G-G-A-TACTA 1453
Query 1478 TGGAGATGCACTC-TTTGATACAAGAAATGGGCAAGGAGATTAACCGTACACAGTCTAGT 1536
| ||||||||| | |||| ||||||| ||||| ||||||||| |||| ||||||| | |
Sbjct 1454 TTGAGATGCAC-CGTTTGCTACAAGATATGGGTAAGGAGATTGTCCGTGCACAGTCAAAT 1512
Query 1537 GAGCCTGGAGGACGACAATTCCTTCTGGATTCGAAAG-ATGTTTTC-ACTATACTTGAAG 1594
|||||||||| ||| |||||||| |||||||||| | || | | | | | |||||||||
Sbjct 1513 GAGCCTGGAGAACGGGAATTCCTTGTGGATTCGAA-GCATATCTACGA-TGTACTTGAAG 1570
Query 1595 ATAACACTGGTACTGAAAACGTTTTAGGTATATCATTGGATAT-AGATGAGACTGATGAA 1653
|||||||||||||| |||| || |||||||| || ||||||| | | |||||||||| |
Sbjct 1571 ATAACACTGGTACTAAAAAAGTCTTAGGTATCGCACTGGATATTA-ACGAGACTGATGGA 1629
Query 1654 CTGCATATTCATGAGAGTGCCTTCAAAGAGATGCGTAATCTTCAATTTCTAAGGATTTCT 1713
||| |||| ||||||||||||||||||| |||||||||||| | ||||||| |||| |
Sbjct 1630 CTGTATATACATGAGAGTGCCTTCAAAGGGATGCGTAATCTCCTGTTTCTAA--ATTTTT 1687
Query 1714 AC-C-AAGGAGAACAAAAAAGCTAG-ATTGAACTTACCAGAAGACTTCGATTTTTTACCA 1770
|| | || |||| ||| | | || || | ||||| |||||| |||||| ||||||
Sbjct 1688 ACACTAAACAGAAGAAAGATG-TAACATGGCACTTATCAGAAGGTTTCGATCATTTACCC 1746
Query 1771 CCTAAGCTCAGATTACTGAGTTGG-AGAGGTTACCCGCTT-AGATCTATGCCATCTACAT 1828
|||||||||||||||||||||||| | | | ||||| || |||| |||||| |||| |
Sbjct 1747 CCTAAGCTCAGATTACTGAGTTGGGAAAAAT-ACCCG-TTGAGATGTATGCCTTCTA-AC 1803
Query 1829 TTT-GTCCTCAATCCCTTGTTAAGCT-CGAAATGAG-GTACAGCTATTTCGAGATGCTGT 1885
||| |||| || |||||||||||| | ||||| | | | ||| | |||| | | |||
Sbjct 1804 TTTCGTCCAGAAAACCTTGTTAAGCTTC-AAATGTGTG-AGAGCAAACTCGAAAAGTTGT 1861
Query 1886 GGGATGGAGTTCAACCACTTACTACG-CTCAAGAAGATGGATTTGTGGGGATCCA-AAAA 1943
||||||||||||| ||||||| | | |||| ||| ||||||||| ||||||| | ||||
Sbjct 1862 GGGATGGAGTTCATTCACTTAC-AGGGCTCAGGAATATGGATTTGCGGGGATC-AGAAAA 1919
Query 1944 CCTGAAAGAAATCCCTGATCTTTCAGTGGCCACAAATCTCGAGACACTTAAT-TTAGCGG 2002
|||||||||||| || |||||||| ||||||| || ||| ||| |||| || |||||
Sbjct 1920 CCTGAAAGAAATTCCAGATCTTTCTTTGGCCACTAACCTCAAGAAACTTGATGTTAGCAA 1979
Query 2003 CTTGCTCGAGTTTGGTGGAGCTT-CATTCCTCTGTGCAGTATCTCAATAAACT-GAAGAG 2060
|||| | ||||| ||||||||| | |||| | | ||| |||| ||| || | || ||
Sbjct 1980 -TTGCACAAGTTTAGTGGAGCTTTC-TTCCACAATTCAGAATCTTAATCAATTAGAGGA- 2036
Query 2061 ATTGAACTTGTCATATTGCGAAAATCTGGAGACTCTTCCTACC--AACTTCAACCTCCAA 2118
|||| | || | |||||||||| |||||| |||||| | || | ||||||| ||
Sbjct 2037 ATTGCAGATGGAACGTTGCGAAAATTTGGAGAATCTTCCCATTGGAA-T-CAACCTCGAA 2094
Query 2119 GCTCTGGACTGCCTCAATCTCTTTGGATGCTCAA-GCATAAAGAGCTTTCCTGATATCTC 2177
|||| | |||||||||||| ||||||||||| | | | ||| ||||| ||||||||
Sbjct 2095 TCTCTTTATTGCCTCAATCTCAATGGATGCTCAAAGT-TGAGGAGTTTTCCAGATATCTC 2153
Query 2178 AACCAAC-ATCTCATATCTCAATCTAAG 2204
||| ||| |||||| | ||| |||||||
Sbjct 2154 AAC-AACTATCTCAGAGCTCTATCTAAG 2180
> AT1G31540.2 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr1:11288452-11293753 REVERSE LENGTH=4239
Length=4239
Score = 161 bits (87), Expect = 3e-38
Identities = 198/248 (80%), Gaps = 22/248 (9%)
Strand=Plus/Plus
Query 2011 AGTTTGGTGGAGCTTCA-TTCCTC-TGTGCAGTATCTCAATAAACTGAAGAGA-TTGAAC 2067
||||||||||||||| | |||||| | | ||| |||||||| |||||||| || |||| |
Sbjct 2412 AGTTTGGTGGAGCTT-ACTTCCTCAT-TTCAGAATCTCAATCAACTGAAG-GACTTGATC 2468
Query 2068 -TTGTCATATTGCGA-AAATCTGGAGACTCTTCCTACC--AACTTCAACCTCCAAGCTCT 2123
| | | | ||| | ||||||||||||||| || ||| || ||||||||||| ||||
Sbjct 2469 ATAAT-AAACTGC-ATAAATCTGGAGACTCTGCCCACCGGAA--TCAACCTCCAATCTCT 2524
Query 2124 GGACTGCCTCAATCTCTTTGGATGCTCA-AGCATAAAGAGCTTTCCTGATATCTCAACCA 2182
|| | ||| | || |||||||||| || | | |||||||||||| ||||||||||
Sbjct 2525 TGATTACCTTTGTTTCAGTGGATGCTCACAG-TTGAGGAGCTTTCCTGAAATCTCAACCA 2583
Query 2183 ACATCTCATAT-CTCAATCTAAGTC-AAACCAG-GATTGAAGAGGTTCCTTGGTGGATCG 2239
|||||||| | ||| |||| || | ||| ||| ||||||||||||||||||||||||||
Sbjct 2584 ACATCTCA-GTGCTCTATCT-AGACGAAA-CAGCGATTGAAGAGGTTCCTTGGTGGATCG 2640
Query 2240 AGAACTTC 2247
|||| |||
Sbjct 2641 AGAAATTC 2648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147641313249
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5