BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916056
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
AT5G46470.1 | Symbols: RPS6 | disease resistance protein (TIR-N... 1072 0.0
> AT5G46470.1 | Symbols: RPS6 | disease resistance protein (TIR-NBS-LRR
class) family | chr5:18842701-18849741 FORWARD LENGTH=4849
Length=4849
Score = 1072 bits (580), Expect = 0.0
Identities = 829/950 (87%), Gaps = 13/950 (1%)
Strand=Plus/Plus
Query 128 CTTCTTCTTCCTCTTCTCGTACTAGGTCATATGATGTTTTCCCGAGCTTCAGCGGAGAAG 187
|||| || ||||||||||| | | |||||||| | ||||||||||| |||||||||||||
Sbjct 11 CTTCCTCCTCCTCTTCTCGCAATTGGTCATATCACGTTTTCCCGAGTTTCAGCGGAGAAG 70
Query 188 ATGTCCGCAAGACCTTCCTCAGCCACTTTCTAAAGGAACTTGATAGGAGACTGATCCTTG 247
|||||||||| || ||||| |||||||||||||| ||||| ||||||| ||||||| ||
Sbjct 71 ATGTCCGCAACACATTCCTTAGCCACTTTCTAAAAGAACTGGATAGGAAACTGATCATTT 130
Query 248 CTTTCAAAGACAACGAGATCGAGAGAAGCCGGTCACTTGATCCTGAGCTTAATCATGCGT 307
||||||||||||| |||||||||||||||| |||||||||||| || ||||| |||| |
Sbjct 131 CTTTCAAAGACAATGAGATCGAGAGAAGCCAGTCACTTGATCCCGAACTTAAACATGGGA 190
Query 308 TTA-AAGGTTCCAAAATCGCGGTGGTCGTGTTCTCCAGAAA-CTACGCTTCTTCAAGCTG 365
||| || ||||| ||| |||||||| |||||||||| ||| ||| || |||||||||||
Sbjct 191 TTAGAA-ATTCCAGAATTGCGGTGGTTGTGTTCTCCA-AAACCTATGCCTCTTCAAGCTG 248
Query 366 GTGTCTTAATGAGTTGCTGGAGATCGTGAGATGCAAGGAAGAGTTTGGTCAAATGGTGGT 425
||| ||||| ||| | |||||||| |||| ||||||| |||||||||| ||| | ||| |
Sbjct 249 GTGCCTTAACGAGCTACTGGAGATTGTGAAATGCAAGAAAGAGTTTGGCCAACTTGTGAT 308
Query 426 TCCTATTTTCTACCATTTGGATCCTTCCCATGTGAGGAAACAAACCGGTGACTTTGGGAA 485
|| ||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 309 ACCCATTTTCTACAATTTGGATCCATCCCATGTGAGGAAACAGACCGGAGACTTTGGGAA 368
Query 486 GATGTTTGAACAGACATGCC-AACATAAAACAGAGGACCAGAAAATTAGATGG-AGAAGA 543
||| |||||| ||||||||| || ||||||||| ||| ||||||| ||||| || | |
Sbjct 369 GATCTTTGAAAAGACATGCCGAA-ATAAAACAGTGGATGAGAAAATCCGATGGAAGGA-A 426
Query 544 GCTTTGACCGATGTAGCTAATATCCTTGGATATCATAGTGTGGCATGGGACAATGAAGCA 603
||||||||||||||||||||||||||||||||||||| ||| | ||||| || ||||||
Sbjct 427 GCTTTGACCGATGTAGCTAATATCCTTGGATATCATATTGTTACCTGGGATAACGAAGCA 486
Query 604 AGCATGGTCGAAGAATTCGCTAATGATGTTTTGGGTAAATTGACTTTATCTCCATCAAAT 663
|||||| |||||||| |||| |||||| ||||||||||| ||| | ||||||||||||||
Sbjct 487 AGCATGATCGAAGAAATCGCCAATGATATTTTGGGTAAAATGAATATATCTCCATCAAAT 546
Query 664 GTTTTTGAAGACTTTGTCCGAATTGAAGATCATATCA-AAGAGATAAGTTCATTGCTGCA 722
| |||||| ||||| ||| | |||||||||||||||| || |||| ||||||||||||||
Sbjct 547 GATTTTGAGGACTTGGTCGGTATTGAAGATCATATCACAA-AGATGAGTTCATTGCTGCA 605
Query 723 CTTGGAATCCGAGGAAGTGAGGATGGTGGGGATTTGGGGTCCCTCCGGAATTGGCAAGAC 782
||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 606 CTTGGAATCTGAGGAAGTGAGGATGGTCGGGATATGGGGTCCCTCGGGAATTGGCAAAAC 665
Query 783 TACCATTGCAAGAGCTCTATTTAGTCGTCTCTCTTGTCAGTTCCGAAGTAGTGTTTTCAT 842
|||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 666 GACCATTGCAAGAGCTCTATTTAGTCGACTCTCTTGTCAGTTTCAAAGTAGTGTTTTCAT 725
Query 843 AGAAAAAGTTTTCATATCTAAGAGTATGGATGTTTACAGTAGAGCTAGTCTAGTTGACTA 902
|| || ||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||
Sbjct 726 TGACAAGGTTTTCATATCTAAGAGTATGGAAGTTTACAGTGGAGCTAATCTTGTTGACTA 785
Query 903 TAACATGAAGTTGCACTTGCAAAGAACTTTTCTAGCTGAAATTTTAGACAAAAAAGACAT 962
||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||||
Sbjct 786 TAACATGAAGTTGCACTTGCAAAGAGCCTTTCTAGCTGAAATTTTTGACAAAAAGGACAT 845
Query 963 AAAGATAGATCATATAGGTGCAATGGAAAAGATTCTAAAGCACCATAAAGTTCTTATCTT 1022
||||||| ||| ||||||||||||||||||| ||||||||| |||| ||| ||| |
Sbjct 846 AAAGATA---CATGTAGGTGCAATGGAAAAGATGGTAAAGCACCGGAAAGCTCTCATCGT 902
Query 1023 TGTTGATGATTTGGATGACCAAGATGTCCTAGATGCCTTAGTGGGTCAAA 1072
| |||||||||| ||||| |||||||| |||||||| |||| || |||||
Sbjct 903 TATTGATGATTTAGATGATCAAGATGTGCTAGATGCTTTAGCGGATCAAA 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58483634925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5