BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916060
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42670.1 | Symbols: | Agenet domain-containing protein | ch... 1014 0.0
> AT5G42670.1 | Symbols: | Agenet domain-containing protein |
chr5:17108262-17110761 FORWARD LENGTH=1202
Length=1202
Score = 1014 bits (549), Expect = 0.0
Identities = 740/830 (89%), Gaps = 22/830 (3%)
Strand=Plus/Plus
Query 1 ATGACTCAAATCAATCTACCATTTGAAGTTGGTCAAACTGTAGAATT-AAGATCTTTT-A 58
|||| | |||| ||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 73 ATGAGTGAAATGAATCTACCATTTGAAGTTGGTCAAACTGTAGAATTGAA-ATCTTTTGA 131
Query 59 TATCGGGTTATCGTGGTGCTTGGTTTCGATGCAAGAAAAGGAGAGCATTATTCTATGATG 118
|| ||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 132 -ATTGGGTTTTCGTGGTGCTTGGTTTCGTTGCAAGAAAAGGAAAGCATTATTCTTTGATG 190
Query 119 TGGAGTATCTTGATTATCCCGGAG-AGAGTATACATACAACAAAAGTATTTCAACAACTC 177
| |||||| |||||||||| |||| || | |||||| |||||||||||||||||||||||
Sbjct 191 TTGAGTATATTGATTATCCAGGAGAAG-GGATACATTCAACAAAAGTATTTCAACAACTC 249
Query 178 GAAGGTGGGAGTGAGAAACACCTAATGATTCGACCTGTATATCCACGACAATGCCATGAA 237
||||| || | |||||| | | |||||||||||||||||||| | |||||| | ||||
Sbjct 250 GAAGGCGGAAACGAGAAATGCTTGATGATTCGACCTGTATATCCGCCACAATGTCGTGAA 309
Query 238 AATGAAGTCCTTAACAAGGAGGGTGGTGGTCTAGAAGAAGCTGC-TGTTGTTCATGATGA 296
||||||| | | || ||| ||||||||||||||| | ||||||||||| |
Sbjct 310 AATGAAG----T--C---GA---TGGCGGTCTAGAAGAAGCT-CTTGTTGTTCATGGTTC 356
Query 297 TTGGAAGGTTGGTGATTTGGTCGATTGGTGGGAAGCCTATTGTTATTGGTCTGGGACGGT 356
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 357 TTGGAAGGTTGGTGATTTGGTTGATTGGTGGGAAGCCTATTGTTATTGGTCTGGGACTGT 416
Query 357 TCTGGAAGTGAAAGAAAATGGATCAGTACAGATTGAATTGTTGGCTCCACCACATGGCGA 416
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 417 TCTGGAAGTGAAAGAAAATGAATCAGTACAGATTGAATTGTTGGCTCCACCATATGGCGA 476
Query 417 AGGGAGTATCTATGACGC-CATGTCTAAGGATTTGCGACCATCATTGGAATGGTCACTTG 475
|||||||| |||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 477 AGGGAGTAGCTATGAGGCTCA-GTCTAAGGATTTGCGACCATCATTGGAATGGTCACTTG 535
Query 476 AAGATGGTTGGACTGTACCTTTTTCTAAGGATGGGGAGAAGAGGCAATGTGCTAAGCTAA 535
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 AAGATGGTTGGACTGTACCTTTTTCTAAGGATGGGGAAAAGAGGCAATGTGCTAAGCTAA 595
Query 536 TGAAACATTTGAATGAAGATCAAGTGAATGAGGCCGAATCAATGgaagaagaagagcaga 595
||||||| || |||||||||||||||| ||| || ||||| |||||||||||| ||||||
Sbjct 596 TGAAACAGTTAAATGAAGATCAAGTGAGTGAAGCTGAATCTATGGAAGAAGAAAAGCAGA 655
Query 596 gtggagctgaacctagagaggaagaaaagcagagacccacagagaagTTGAAAAAAGATG 655
| ||||| ||||||| ||| ||||||||||||||||| ||||| |||||||||| ||||
Sbjct 656 GAGGAGCCGAACCTAAAGAAGAAGAAAAGCAGAGACCGACAGAAAAGTTGAAAAGCGATG 715
Query 656 GAGCTCTTCGGTTGAACATCATGGAATCAGAGTCTGTCGAAGCTGCTGTCTTGGACTTGG 715
|||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 716 AAGCTCTTCAGTTGAACATCATGGATTCAGAGTCTATCGAAGCTGCTGTCTTGGACTTGG 775
Query 716 AAGAGCTGATTGTTCGTTTCGAGTGGATGAAAGGCATTTTAGCTCCTGATTCTTCAGAAA 775
||||| |||||||||||||||||||| |||||| ||| ||| ||||||||||||| ||||
Sbjct 776 AAGAGATGATTGTTCGTTTCGAGTGGCTGAAAGACATCTTAACTCCTGATTCTTCGGAAA 835
Query 776 AATCTTCCTGGATATACGAGCCTTACCGTCCATCCTCCTCAAGAATCTGA 825
|| |||||||||||||||| ||| | |||||||||||||||||| |||
Sbjct 836 AAAATTCCTGGATATACGAGGATTATCATCCATCCTCCTCAAGAATGTGA 885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5