BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916062
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13960.1 | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr... 1306 0.0
AT4G12020.2 | Symbols: WRKY19, ATWRKY19, MAPKKK11, MEKK4 | prot... 372 3e-102
AT2G03340.1 | Symbols: WRKY3 | WRKY DNA-binding protein 3 | chr... 200 2e-50
> AT1G13960.1 | Symbols: WRKY4 | WRKY DNA-binding protein 4 | chr1:4776605-4779400
FORWARD LENGTH=1919
Length=1919
Score = 1306 bits (707), Expect = 0.0
Identities = 796/837 (95%), Gaps = 14/837 (2%)
Strand=Plus/Plus
Query 1 ATGTCGGAAAAGGAAGAAGCTCCGTCGACATCGAAGTCTACCAGAGCTCCGTCGCGTCCG 60
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 18 ATGTCGGAAAAGGAAGAAGCTCCGTCGACATCGAAGTCCACCGGAGCTCCGTCGCGTCCG 77
Query 61 ACTTTATCTCTTCCTCCACGGCCGTTTAGTGAGATGTTCTTTAACGGTGGCGTTGGATTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 ACTTTATCTCTTCCTCCACGGCCGTTTAGTGAGATGTTCTTTAACGGTGGCGTTGGATTC 137
Query 121 AGTCCTGGTCCGATGACTCTGGTCTCTAATATGTTCTCTGATTCCGATGAGTTTAGGTCT 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 138 AGTCCTGGTCCGATGACTCTGGTCTCTAATATGTTCCCTGATTCCGATGAGTTTAGGTCT 197
Query 181 TTCTCTCAGCTCCTTGCTGGAGCCATGACTTCTCC--CG-C-G-A-------CTGCAGCT 228
||||||||||| || |||||||||||| ||||||| || | | | |||| |||
Sbjct 198 TTCTCTCAGCTTCTCGCTGGAGCCATGTCTTCTCCAGCGACTGCAGCTGCTGCTGCTGCT 257
Query 229 GCTGCGACGGCTAGTGATTACCAAAGAATTGGTGAAGGGACTAATAGCTCGAGTGGTGAT 288
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 258 GCTGCGACGGCTAGTGATTACCAGAGACTTGGTGAAGGGACTAATAGCTCTAGTGGTGAT 317
Query 289 GTTGACCCGAGATTCAAGCAAAACAGACCAACCGGTTTGATGATTTCTCAATCTCAATCG 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GTTGACCCGAGATTCAAGCAAAACAGACCAACCGGTTTGATGATTTCTCAATCTCAATCG 377
Query 349 CCGTCGATGTTCACCGTACCGCCTGGTTTAAGTCCGGCCT-TGTTGATGGATTCACCAAG 407
||||||||||||||||||||||||||||||||||| | || ||||| | |||||||||||
Sbjct 378 CCGTCGATGTTCACCGTACCGCCTGGTTTAAGTCCAG-CTATGTTGCTCGATTCACCAAG 436
Query 408 CTTTTTGGGTCTTTTCTCTCCCGTTCAGGGATCATATGGAATGACACATCAGCAAGCTCT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 CTTTTTGGGTCTTTTCTCTCCCGTTCAGGGATCATATGGAATGACACATCAGCAAGCTCT 496
Query 468 AGCTCAAGTCACTGCTCAAGCAGTTCAAGCCAATGCCAATATGCAACCACAAACAGAGTA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AGCTCAAGTCACTGCTCAAGCAGTTCAAGCCAATGCCAATATGCAACCACAAACAGAGTA 556
Query 528 CCCTCCTTCCTCTCAAGTTCAATCATTTTCATCGGGTCAAGCTCAGATCCCGACCTCGGC 587
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 557 CCCTCCTCCCTCTCAAGTTCAATCATTTTCATCGGGTCAAGCGCAGATCCCGACCTCGGC 616
Query 588 TCCACTACCAGCTCAAAGAGAAACCTCATATGTGACCATCATCGAGCACAGGTCCCAACA 647
|||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||
Sbjct 617 TCCACTACCAGCTCAAAGAGAAACCTCAGATGTAACCATCATAGAGCACAGGTCACAACA 676
Query 648 CCCTCTAAATGTTGACAAACCAGCTGATGATGGTTATAACTGGCAAAAATATGGGCAAAA 707
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 677 GCCTCTAAATGTTGACAAACCAGCTGATGATGGCTATAACTGGCGAAAATATGGGCAAAA 736
Query 708 GCAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAGTGTACTAATCCAGGATGTCC 767
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 737 GCAAGTTAAAGGTAGCGAGTTTCCACGAAGCTATTACAAGTGTACTAATCCAGGATGTCC 796
Query 768 TGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAAATCATCTACAA 824
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 797 TGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAGATTATCTACAA 853
> AT4G12020.2 | Symbols: WRKY19, ATWRKY19, MAPKKK11, MEKK4 | protein
kinase family protein | chr4:7201656-7209648 FORWARD LENGTH=5867
Length=5867
Score = 372 bits (201), Expect = 3e-102
Identities = 309/358 (86%), Gaps = 19/358 (5%)
Strand=Plus/Plus
Query 481 GCTCAAGCAGTTCAAGCCAATGCCAATATGCAACCACAAACAGAGTACCCTCCTTCCTCT 540
|||||| |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 1201 GCTCAAACAGTTCAAGCCAATGCCAATATGCAACCTCAAACTGAGTACCCTTCTTCCTCT 1260
Query 541 -CAAGTTCAATCATTTTCATCGGGTCAAGCTCAGATCCCGACCTCGGCTCC--A--C-T- 593
| |||||||||||||||||||||||| |||||||||| ||||| ||||| | | |
Sbjct 1261 GC-GGTTCAATCATTTTCATCGGGTCAACCTCAGATCCCCACCTCAGCTCCGGATTCTTC 1319
Query 594 AC--C-AGCTCAAAGAG-AA-ACCTCATATGTGACCATCATCGAGCACAGGTCCCAACAC 648
|| | |||| ||| || || |||||| | | || ||||||||||||| ||| |||||
Sbjct 1320 ACTACTAGCT-AAA-AGTAATACCTCAGGTATAACTATCATCGAGCACATGTCACAACAG 1377
Query 649 CCTCTAAATGTTGACAAACCAGCTGATGATGGTTATAACTGGCAAAAATATGGGCAAAAG 708
||||||||||||||||||| || | ||||||| |||||||||||||| ||||||||||||
Sbjct 1378 CCTCTAAATGTTGACAAACAAGTTAATGATGGCTATAACTGGCAAAAGTATGGGCAAAAG 1437
Query 709 CAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAGTGTACTA-ATCCAGGATGTCC 767
|||||||||||||| ||||||||| ||||||||||||||| || | ||| |||||||||
Sbjct 1438 AAAGTTAAAGGCAGCAAGTTTCCTCTAAGCTATTACAAGTGCAC-ATATCTAGGATGTCC 1496
Query 768 TGT-CAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAAATCATCTACAA 824
| | ||||| ||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 1497 T-TCCAAGAGGAAGGTTGAGAGATCTCTTGATGGACAAGTAGCAGAAATCGTCTACAA 1553
> AT2G03340.1 | Symbols: WRKY3 | WRKY DNA-binding protein 3 | chr2:1014350-1017148
REVERSE LENGTH=2128
Length=2128
Score = 200 bits (108), Expect = 2e-50
Identities = 156/180 (87%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 645 ACACCCTCTAAATGTTGACAAACCAGCTGATGATGGTTATAACTGGCAAAAATATGGGCA 704
||| |||| ||||| ||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 932 ACAGCCTCAAAATGCTGACAAACCAGCTGATGATGGATACAACTGGCGGAAATATGGGCA 991
Query 705 AAAGCAAGTTAAAGGCAGCGAGTTTCCTCGAAGCTATTACAAGTGTACTAATCCAGGATG 764
|||||||| || || ||||| |||||||| || |||||||| ||||| |||||| ||
Sbjct 992 GAAGCAAGTGAAGGGGAGCGATTTTCCTCGGAGTTATTACAAATGTACGCATCCAGCTTG 1051
Query 765 TCCTGTCAAGAAGAAGGTTGAGAGATCTCTTGATGGACAAGTAACGGAAATCATCTACAA 824
||||||||||||||| || ||||| || || |||||||||||||||||||||||||||||
Sbjct 1052 TCCTGTCAAGAAGAAAGTGGAGAGGTCACTCGATGGACAAGTAACGGAAATCATCTACAA 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5