BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916063

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G27180.1 | Symbols: ATK2, KATB | kinesin 2 | chr4:13614856-1...   152    1e-36


> AT4G27180.1 | Symbols: ATK2, KATB | kinesin 2 | chr4:13614856-13619156 
REVERSE LENGTH=2612
Length=2612

 Score =  152 bits (82),  Expect = 1e-36
 Identities = 98/105 (93%), Gaps = 3/105 (3%)
 Strand=Plus/Plus

Query  25   TTA-AAGGAGAGATGTGAGAATATGATCGAATATGTAAAAAGGCTTAGGCTTTGCATTAG  83
            ||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||
Sbjct  335  TTACAAGGAGAGATGTGAGAATACGATGGACTATGTAAAAAGGCTTAGGCTTTGCATTAG  394

Query  84   ATGGTTTCAAGAACTCGAGTTAGATTACGTC-TTTGAGCAAGAGA  127
            ||||||||||||||||||||||||||| | | |||||||||||||
Sbjct  395  ATGGTTTCAAGAACTCGAGTTAGATTATG-CATTTGAGCAAGAGA  438



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9651407808


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5