BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916065
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42650.1 | Symbols: AOS, CYP74A, DDE2 | allene oxide synthas... 1474 0.0
> AT5G42650.1 | Symbols: AOS, CYP74A, DDE2 | allene oxide synthase
| chr5:17097595-17099395 REVERSE LENGTH=1801
Length=1801
Score = 1474 bits (798), Expect = 0.0
Identities = 881/921 (96%), Gaps = 6/921 (1%)
Strand=Plus/Plus
Query 481 GACGGAACCGCCTGTAATTTCTTGGCTCGAGCTTTCTACGGGACGAATCCCGTAGATACA 540
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 676 GACGGAACCGCCTTTAATTTCTTGGCTCGAGCTTTCTACGGGACGAATCCCGCAGATACA 735
Query 541 AAGCTCAAAGCCGACGCGCCCGGTTTGATCACTAAATGGGTTTTATTCAATCTCCATCCG 600
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 736 AAGCTCAAAGCCGACGCTCCGGGTTTGATCACTAAATGGGTTTTATTCAATCTCCATCCA 795
Query 601 TTACTCTCTCTCGGTTTACCAAGAATTGTAGAAGATCCTCTCCTCCATACATTTAGTCTA 660
||||||||| | |||||||| ||| || ||||||| |||||| |||||||||||||||||
Sbjct 796 TTACTCTCTATTGGTTTACCGAGAGTTATAGAAGAACCTCTCATCCATACATTTAGTCTA 855
Query 661 CCACCGGCGTTAGTCAAATCTGATTACCAGAGACTCTACGAGTTTTTC-TACGAATCCGC 719
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 856 CCACCGGCGTTAGTCAAATCTGATTACCAGAGACTCTACGAGTTTTTCTTA-GAATCCGC 914
Query 720 CGGTGAAATTCTCGTTGAAGCCGATAAATTGGGTATCTCACGAGAAGAAGCGACTCACAA 779
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 915 CGGTGAGATTCTCGTTGAAGCCGATAAATTGGGTATCTCACGAGAAGAAGCTACTCACAA 974
Query 780 TCTTCTCTTCGCCACGTGCTTCAACACGTGGGGTGGGATGAAGATCCTT-TTCCCGAATA 838
||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 975 TCTTCTCTTCGCCACGTGCTTCAACACGTGGGGTGGGATGAAGAT-TTTGTTTCCGAATA 1033
Query 839 TGGTTAAACGGATCGGGCGGGCGGGTCATAAAGTCCATAATCAG-TTAGCGGAGGAGATT 897
|||||||||| |||||||||||||||||| |||| ||||| | | |||||||||||||||
Sbjct 1034 TGGTTAAACGTATCGGGCGGGCGGGTCATCAAGTTCATAA-CCGATTAGCGGAGGAGATT 1092
Query 898 AGATCTGTGATTAAATCCAACGGTGGAGAACTCACGATGGGAGGGATTGAGAAAATGGAG 957
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1093 AGATCTGTGATTAAATCCAACGGCGGAGAACTCACGATGGGAGCGATTGAGAAAATGGAG 1152
Query 958 TTAACCAAATCTGTGGTTTACGAATGTCTCCGGTTTGAACCACCGGTTCCGGCGCAATAC 1017
||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1153 TTAACCAAATCAGTGGTTTACGAATGTCTCCGGTTTGAACCACCGGTTACGGCTCAATAC 1212
Query 1018 GGTAGAGCGAAGAAAGATCTGGTTATCGAAAGCCACGACGCGGCGTTTAAAGTCAAAGCC 1077
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GGTAGAGCGAAGAAGGATCTGGTTATCGAAAGCCACGACGCGGCGTTTAAAGTCAAAGCC 1272
Query 1078 GGTGAAATGCTTTACGGTTATCAACCGTTGGCGACGAGAGATCCGAAGATTTTTGATAGA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1273 GGTGAAATGCTTTACGGTTATCAACCGTTGGCGACGAGAGATCCGAAGATTTTTGATCGG 1332
Query 1138 GCGGATGAGTTTGTGCCGGAGAGATTCGTCGGAGAAGAAGGAGAGAAGCTGTTGCGGCAT 1197
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1333 GCGGATGAGTTTGTGCCGGAGAGATTCGTCGGAGAAGAAGGAGAGAAGCTTTTGAGGCAT 1392
Query 1198 GTGTTGTGGTCGAATGGACCGGAGACGGAGACTCCGACGGTGGGGAATAAACAATGCGCC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 GTGTTGTGGTCGAATGGACCGGAGACGGAGACTCCGACGGTGGGGAATAAACAATGCGCC 1452
Query 1258 GGTAAGGATTTCGTTGTTTTGGTGGCGAGGTTGTTTGTGATTGAGATTTTCCGGCGATAT 1317
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 GGTAAGGATTTTGTTGTTTTGGTGGCGAGGTTGTTTGTGATTGAGATTTTCCGGCGATAT 1512
Query 1318 GATTCGTTTGATATTGAGGTTGCTAAGTCGCCGTTAGGAAGCTCCGTTAATTTCACGTCG 1377
|||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||
Sbjct 1513 GATTCGTTTGATATTGAGGTTGGTACGTCGCCGTTAGGAAGCTCCGTTAATTTCTCGTCG 1572
Query 1378 TTAAGGAAAGCTAGCTTTTAG 1398
|||||||||||||||||||||
Sbjct 1573 TTAAGGAAAGCTAGCTTTTAG 1593
Score = 726 bits (393), Expect = 0.0
Identities = 451/479 (94%), Gaps = 3/479 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTGTTTCAACTCCTTTTCCGATTTCTCTCCACCCAAAGATCGTACGATCAAAG 60
||||||||| ||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 37 ATGGCTTCTATTTCAACCCCTTTTCCGATTTCTCTCCACCCAAAAACCGTACGATCAAAG 96
Query 61 CCGTTGAAATTTCGAGTTTTGACCCGTCCGATCAAAGCTTCCGGGTCAGAAACACCTCCT 120
||||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 97 CCGTTGAAATTCCGAGTTTTGACCCGTCCGATCAAAGCTTCCGGGTCAG-AA-A-CTCCT 153
Query 121 GATCTAGCCGTAGCGACACGAACCGGATCTAAAGATCTCCCGATCCGGAACATACCGGGA 180
|||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 154 GATCTAACCGTAGCGACACGAACCGGATCCAAAGATCTCCCGATCCGAAACATACCGGGA 213
Query 181 AACTACGGTTTACCAATCGTTGGACCAATCAAAGACCGTTGGGATTACTTTTACGACCAA 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 214 AACTACGGTTTACCAATCGTAGGACCAATCAAAGACCGTTGGGATTACTTTTACGACCAA 273
Query 241 GGAGCTGAAGAGTTCTTCAAATCAAGAATCCGTAAATACAATTCAACCGTGTACCGAGTC 300
|||||||||||||||||||||||| |||||||||||||||| || || |||||| |||||
Sbjct 274 GGAGCTGAAGAGTTCTTCAAATCACGAATCCGTAAATACAACTCCACGGTGTACAGAGTC 333
Query 301 AACATGCCACCGGGAGGTTTTATCGCCGAGAATCCACAAGTTGTGGCTTTACTCGACGGT 360
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 334 AACATGCCACCGGGAGCTTTTATCGCCGAGAATCCACAAGTCGTGGCTTTACTCGACGGT 393
Query 361 AAAAGCTTCCCGGTTTTATTCGATGTCGATAAAGTCGAAAAGAAAGATCTCTTCACCGGT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 394 AAAAGCTTCCCGGTTTTATTCGATGTCGATAAAGTCGAAAAGAAAGATCTTTTCACCGGT 453
Query 421 ACTTACATGCCTTCAACAGACCTCACTGGCGGTTACCGTATCCTCTCTTACCTCGATCC 479
||||||||||| ||||| || || || || || |||||||||||||| |||||||||||
Sbjct 454 ACTTACATGCCGTCAACGGAACTAACCGGAGGCTACCGTATCCTCTCGTACCTCGATCC 512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68875147740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5