BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916095 Length=279 Score E Sequences producing significant alignments: (Bits) Value AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 RE... 69.4 2e-11 > AT5G40275.1 | Symbols: | other RNA | chr5:16098190-16100051 REVERSE LENGTH=895 Length=895 Score = 69.4 bits (37), Expect = 2e-11 Identities = 46/50 (92%), Gaps = 2/50 (4%) Strand=Plus/Plus Query 8 GGAATTACTCT-TCGTTGCCAATCTCTCTCCCCAAACTAAAATATTACAT 56 |||| |||||| | |||||||||||||||||||||||||||||||| ||| Sbjct 134 GGAAGTACTCTAT-GTTGCCAATCTCTCTCCCCAAACTAAAATATTGCAT 182 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12818275995 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5