BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916100
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT5G24775.1 | Symbols: | transposable element gene | chr5:8503... 339 3e-92
AT4G03740.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 333 1e-90
> AT5G24775.1 | Symbols: | transposable element gene | chr5:8503317-8506432
FORWARD LENGTH=3116
Length=3116
Score = 339 bits (183), Expect = 3e-92
Identities = 265/304 (87%), Gaps = 7/304 (2%)
Strand=Plus/Plus
Query 88 CATGAATTCAATTGGGAT-ATTGTCCACGCACCC-CTTATCCGTGTCGCGTTTCACAATT 145
|||||||||||| ||||| | ||||| | ||||| | | ||||| |||||||| |||| |
Sbjct 2248 CATGAATTCAATAGGGATCA-TGTCCTCACACCCAC-TGTCCGTATCGCGTTTAACAAGT 2305
Query 146 ATGCTTCATCAAAATTTGGAGACCACATGAACATTTGGAAGGGAAAGTGGGTGGCAGGCA 205
||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 2306 ATGCTGCATCAAAATTTGCAGACCACATGAACATTTGGAAGGGAAAGTGGGCAGCAGGCA 2365
Query 206 AGGAGTGTCCAAAAGGGTTGAACCCAGACATATGGCTTGGCTTA-AAAGAGTATTGGGTG 264
|||||||||||| ||| ||||||||||||||||||| | || || ||||||||||||| |
Sbjct 2366 AGGAGTGTCCAAGAGGCTTGAACCCAGACATATGGCCTCGC-TATAAAGAGTATTGGGCG 2424
Query 265 TTGTCGGATACTGCTCGTATCGTGGAAACCAACaaaaaaaaaCCAGAAGAGCCAACGAGG 324
||| |||| |||||||||| || |||||||||| | |||||||||| || | || ||
Sbjct 2425 TTGCCGGAGACTGCTCGTACCGCGGAAACCAAC-TCATAAAACCAGAAAAGAGAGCGTGG 2483
Query 325 TGGCAAAGGTATGGCGGTGCACAATGCGGGTTCGACGAGCTTCTTAAGTCGTGTATACGA 384
|||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2484 TGGCAAAGGTGTGGCGGTGCACAATGCGGGTTCGACGAGCTTCTTAAGTCGTACAGACGA 2543
Query 385 ATTG 388
||||
Sbjct 2544 ATTG 2547
> AT4G03740.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr4:1661992-1663515
REVERSE LENGTH=1038
Length=1038
Score = 333 bits (180), Expect = 1e-90
Identities = 326/393 (83%), Gaps = 23/393 (6%)
Strand=Plus/Plus
Query 1 ATGTTGCACGGGATGCTCAAACATCCGTATCCGACGTACAATGATATGCCTGGCAACGAT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 127 ATGTTGCATGGGATGCTCAAACATCCGTATCCGACGTACAATGATATGCCTCGCAACAAT 186
Query 61 CGAGAGCTTTGGTTTAGGACTTTCGCACATGAATTCAATTGGGAT-ATTGTCCACGCACC 119
| |||| |||||||||| ||||| || | ||||||| | ||||||| || |
Sbjct 187 CAAGAGATTTGGTTTAGAACTTT------TG----C-GTTGGGATCA-TGTCCACACA-C 233
Query 120 CCT-TATCCGTGTCGCGTTTCACAATTATGCTTCATCAAAATTTGGAGACCACATGAACA 178
||| | |||||| | ||||||||| |||||| ||||||||||| ||||||||||||||
Sbjct 234 CCTCTGGCCGTGTTGGGTTTCACAAGTATGCTGCATCAAAATTTTCAGACCACATGAACA 293
Query 179 TTTGGAAGGGAAAGTGGGTGGCAGGCAAGGAGTGTCCAAAAGGGTTGAACCCAGACATAT 238
||||||| | |||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 294 TTTGGAAAGAAAAGTGGGCAGCAGGC---GAGTGTCCAAAAGGCTTGAACCCAGACATAT 350
Query 239 GGCTTGGCTTA-AAAGAGTATTGGGTGTTGTCGGATACTGCTCGTATCGTGGAAACCAAC 297
||| | || || ||||||||||| | |||| |||| |||||| ||| || | ||||||||
Sbjct 351 GGCCTCGC-TACAAAGAGTATTGAGCGTTGCCGGAGACTGCTTGTACCGCGAAAACCAAC 409
Query 298 aaaaaaaaaCCAGAAGAGCCAACGAGGTGGCAAAGGTATGGCGGTGCACAATGCGGGTTC 357
|||| | | ||| ||| || | ||||||||||||||| |||||||||||||||||||
Sbjct 410 -TCAAAATATCGGAAAAGCGAATGTGGTGGCAAAGGTATGACGGTGCACAATGCGGGTTC 468
Query 358 GACGAGCTTCTTAAGTCGTGTATA-CGAATTGA 389
||||||||||||||| ||| | | ||||||||
Sbjct 469 GACGAGCTTCTTAAGCCGTACA-AGCGAATTGA 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5