BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916105
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25040.1 | Symbols: ERD2B | endoplasmic reticulum retention ... 1018 0.0
> AT3G25040.1 | Symbols: ERD2B | endoplasmic reticulum retention
defective 2B | chr3:9124304-9126298 FORWARD LENGTH=1070
Length=1070
Score = 1018 bits (551), Expect = 0.0
Identities = 639/681 (94%), Gaps = 7/681 (1%)
Strand=Plus/Plus
Query 1 ATGAACATTTTCAGATTAGCTGGTGATATGACTCACAT-GTTCAGTGTT-TTGGTCTTGC 58
|||||||||||||||||||||||||||||||||||| | | ||||||| || |||||||
Sbjct 176 ATGAACATTTTCAGATTAGCTGGTGATATGACTCACCTAG-CCAGTGTTCTT-GTCTTGC 233
Query 59 TTCTCAAGATCCACACCATCAAATCCTGCGCTGGAGTTTCAGTGAAGACTCAAGAACTCT 118
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 234 TTCTCAAGATCCACACCATCAAATCCTGCGCTGGTGTTTCATTGAAGACTCAAGAACTCT 293
Query 119 ATGCCATTGTCTTTGCGACTCGATATTTGGATATTTTCACGAGTTTTGTGTCTATCTATA 178
||||||||||||||||||| || |||||||||||||||||||||||||||||| | || |
Sbjct 294 ATGCCATTGTCTTTGCGACGCGTTATTTGGATATTTTCACGAGTTTTGTGTCTCTGTACA 353
Query 179 ACACCTTTATGAAGTTGGTGTTCTTAGGAAGTTCCTTTTCGATCGTTTGGTACATGAGGT 238
|||||| ||||||||||||||| ||||||||||| |||||||| || |||||||||| ||
Sbjct 354 ACACCTCTATGAAGTTGGTGTTTTTAGGAAGTTCTTTTTCGATTGTGTGGTACATGAAGT 413
Query 239 ATCATAAGGCCGTCCACAGGACTTACGACAGGGAGCAAGATACGTTTCGTCATTGGTTCC 298
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 414 ATCATAAGGCCGTCCACAGGACTTACGACAGAGAGCAAGATACGTTTCGTCATTGGTTCC 473
Query 299 TTGTGCTTTCGTGCTTACTCTTAGCTCTTCTGATACATGAAAAGTTTACCTTTCTTGAGG 358
|||||||| | ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 474 TTGTGCTTCCTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGG 533
Query 359 TACTGTGGACGTTTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGC 418
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGT 593
Query 419 TGCAAAGGACTAGAAACATTGACAACTTGACCGGGCAATATATATTTCTTCTTGGGGGCT 478
|||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 594 TGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGGGGGT 653
Query 479 ACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCACACTTTGTTC 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 654 ACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGTTC 713
Query 539 ACTGGATAACATGGATCACC-GGTCTTGTTCAAACACTGCTCTATGCCGACTTCTTCTAT 597
||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 714 ACTGGATAACATGGATCGCCGGGT-TTGTTCAAACACTGCTCTATGCCGACTTCTTCTAT 772
Query 598 TATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTC-AATTGCCAGCTTAACTTCAAAAT 656
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |||
Sbjct 773 TATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAATTACCAGCTTAATTTCTAAAG 832
Query 657 TTTCGATGCTCGGAAACCCTA 677
|||| |||||||| |||||||
Sbjct 833 TTTCAATGCTCGGGAACCCTA 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5