BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916105 Length=678 Score E Sequences producing significant alignments: (Bits) Value AT3G25040.1 | Symbols: ERD2B | endoplasmic reticulum retention ... 1018 0.0 > AT3G25040.1 | Symbols: ERD2B | endoplasmic reticulum retention defective 2B | chr3:9124304-9126298 FORWARD LENGTH=1070 Length=1070 Score = 1018 bits (551), Expect = 0.0 Identities = 639/681 (94%), Gaps = 7/681 (1%) Strand=Plus/Plus Query 1 ATGAACATTTTCAGATTAGCTGGTGATATGACTCACAT-GTTCAGTGTT-TTGGTCTTGC 58 |||||||||||||||||||||||||||||||||||| | | ||||||| || ||||||| Sbjct 176 ATGAACATTTTCAGATTAGCTGGTGATATGACTCACCTAG-CCAGTGTTCTT-GTCTTGC 233 Query 59 TTCTCAAGATCCACACCATCAAATCCTGCGCTGGAGTTTCAGTGAAGACTCAAGAACTCT 118 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 234 TTCTCAAGATCCACACCATCAAATCCTGCGCTGGTGTTTCATTGAAGACTCAAGAACTCT 293 Query 119 ATGCCATTGTCTTTGCGACTCGATATTTGGATATTTTCACGAGTTTTGTGTCTATCTATA 178 ||||||||||||||||||| || |||||||||||||||||||||||||||||| | || | Sbjct 294 ATGCCATTGTCTTTGCGACGCGTTATTTGGATATTTTCACGAGTTTTGTGTCTCTGTACA 353 Query 179 ACACCTTTATGAAGTTGGTGTTCTTAGGAAGTTCCTTTTCGATCGTTTGGTACATGAGGT 238 |||||| ||||||||||||||| ||||||||||| |||||||| || |||||||||| || Sbjct 354 ACACCTCTATGAAGTTGGTGTTTTTAGGAAGTTCTTTTTCGATTGTGTGGTACATGAAGT 413 Query 239 ATCATAAGGCCGTCCACAGGACTTACGACAGGGAGCAAGATACGTTTCGTCATTGGTTCC 298 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 414 ATCATAAGGCCGTCCACAGGACTTACGACAGAGAGCAAGATACGTTTCGTCATTGGTTCC 473 Query 299 TTGTGCTTTCGTGCTTACTCTTAGCTCTTCTGATACATGAAAAGTTTACCTTTCTTGAGG 358 |||||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 474 TTGTGCTTCCTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAGG 533 Query 359 TACTGTGGACGTTTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGC 418 || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 TATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCCATATTACCTCAGCTTGTCTTGT 593 Query 419 TGCAAAGGACTAGAAACATTGACAACTTGACCGGGCAATATATATTTCTTCTTGGGGGCT 478 |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| | Sbjct 594 TGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGGGGGT 653 Query 479 ACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCACACTTTGTTC 538 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 654 ACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGTTC 713 Query 539 ACTGGATAACATGGATCACC-GGTCTTGTTCAAACACTGCTCTATGCCGACTTCTTCTAT 597 ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||| Sbjct 714 ACTGGATAACATGGATCGCCGGGT-TTGTTCAAACACTGCTCTATGCCGACTTCTTCTAT 772 Query 598 TATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTC-AATTGCCAGCTTAACTTCAAAAT 656 |||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| ||| Sbjct 773 TATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAATTACCAGCTTAATTTCTAAAG 832 Query 657 TTTCGATGCTCGGAAACCCTA 677 |||| |||||||| ||||||| Sbjct 833 TTTCAATGCTCGGGAACCCTA 853 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32802897991 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5