BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916106
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25050.1 | Symbols: XTH3 | xyloglucan endotransglucosylase/h... 941 0.0
> AT3G25050.1 | Symbols: XTH3 | xyloglucan endotransglucosylase/hydrolase
3 | chr3:9126851-9128416 FORWARD LENGTH=1092
Length=1092
Score = 941 bits (509), Expect = 0.0
Identities = 628/685 (92%), Gaps = 10/685 (1%)
Strand=Plus/Plus
Query 14 CAGGTGGTGGGTTCGAGTCCAAGAACAG-CTACGGATCAGGTCTCTTCCAAATGAGAATC 72
|||||||||||||||| |||||| || | |||||||||||||||||| |||||||||||
Sbjct 215 CAGGTGGTGGGTTCGAATCCAAGGAC-GCCTACGGATCAGGTCTCTTTGAAATGAGAATC 273
Query 73 AAAGTGCCCGGAGGAAATTCTGGCGGCGTCGTCACAGCTTTTTACTTGACGACGAAAGGA 132
|||||||| ||||||| |||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 274 AAAGTGCCTTCAGGAAATACTGGCGGCATCGTCACCGCTTTTTACTTGACGTCGAAAGGA 333
Query 133 GGTGGTCATGACGAGGTTGACTTTGAGTTTCTAGGGAACAACAACGGAAGACCAATAACA 192
|||||||| |||||| ||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 334 GGTGGTCACGACGAGATTGACTTCGAGTTTCTAGGGAACAACAACGGAAAACCGGTAACG 393
Query 193 TTACAGACAAATCTGTTTCTGAATGGAGAAGGAAACAGAGAACAGAGGTTTTTGCTTTGG 252
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 394 TTACAGACAAATCTGTTTCTAAATGGAGAAGGAAACAGAGAAGAGAGGTTTTTGCTTTGG 453
Query 253 TTCAACCCAACCAAACACTACCACACTTATGGGATTCTTTGGAACCCTTACCAAATTGTG 312
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 454 TTCAATCCAACCAAACACTACCACACTTATGGGCTTCTTTGGAACCCTTACCAAATTGTG 513
Query 313 TTTTACGTGGACAACATCCCAATAAGAGTGTACAAAAACGAGAACGGCGTAAGTTATCCA 372
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 514 TTTTACGTGGACAACATCCCAATAAGAGTATACAAAAACGAAAACGGCGTAAGTTATCCA 573
Query 373 TCAAAGCCTATGCAAGTCGAGGCCAGTCTCTGGAACGGTGACGATTGGGCGACTGATGGT 432
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 574 TCAAAGCCTATGCAAGTCGAGGCTAGTCTCTGGAACGGTGACGATTGGGCGACTGATGGT 633
Query 433 GGTCGGACCAAGATTAACTGGTCATACTCTCCTTTCATTGCTCATTTCCAAGACTTCGCT 492
|||||||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 634 GGTCGGACTAAGGTTAACTGGTCATACTCTCCTTTCATTGCACATTTCCGAGACTTCGC- 692
Query 493 CT-ATCCGGCTGCAACATAGATGGTCGGAGTAATAATGTTGCCGCTTGTGAATCCTCCAA 551
|| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 693 CTTATCCGGCTGCAACATAGATGGTCGGAGTAATAATGTCGGCGCTTGTGAATCCTCCAA 752
Query 552 CTACTGGTGGAATGCAG-CTTCCAATCAC-GCCCTAAGCC-ACAACGAACAGAAACTTTC 608
||||||||||||||||| | | | ||| | ||||| | ||||||||||||||||
Sbjct 753 CTACTGGTGGAATGCAGGCAACTA-TCAAAGAT-TAAGCGGA-AACGAACAGAAACTTTA 809
Query 609 TGAGTATGTGAGGAAAAAATACATGAACTATGATTATTGTATTGATCGCTCTAAATACCA 668
||| ||||||||| || |||||||||||||| ||||||| |||||||||||| |||||
Sbjct 810 TGAACATGTGAGGAGCAAGTACATGAACTATGACTATTGTACTGATCGCTCTAAGTACCA 869
Query 669 AACTCCTCCTAGAGAATGTTATTGA 693
|||||||||||||||||||||||||
Sbjct 870 AACTCCTCCTAGAGAATGTTATTGA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5