BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916107
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1520 0.0
> AT3G25060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:9128516-9130321 FORWARD LENGTH=1806
Length=1806
Score = 1520 bits (823), Expect = 0.0
Identities = 1050/1159 (91%), Gaps = 18/1159 (2%)
Strand=Plus/Plus
Query 1 ATGTTACATCGGACTCTCTTGTGTCCGAGACGTC-TCAAATTTTTGCTAT-C--TGCTAG 56
|||||||||||||||||| ||||||||| ||| | |||||||| ||| || | | |||
Sbjct 25 ATGTTACATCGGACTCTCCTGTGTCCGAAACG-CATCAAATTTCTGCAATCCATTTCTA- 82
Query 57 TAATTACAAGCGGCACATTGCTCAGGTTCACGCTTTCGTAATTACTTCCGGTAATTTACT 116
|| | |||||||||||| ||||| | |||||||| ||||| | | | |||||||||||
Sbjct 83 -AACT-CAAGCGGCACATCACTCAGATCCACGCTTTTGTAATCAGTACTGGTAATTTACT 140
Query 117 AAATGGAAGCTCCATTAGTCGCGATCTCGTTGCTTTATATGGACGAATCGGGGAGATCTC 176
||||||||||| |||||||| |||||| | |||| || |||||||||||| ||||||||
Sbjct 141 TAATGGAAGCTCTATTAGTCGAGATCTCATCGCTTCATGTGGACGAATCGGTGAGATCTC 200
Query 177 TTATGCACGTAAGGTGTTCGACCAATTGCCTCAGAGAAGTGTTTCTGTTTATAACTCCAT 236
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||
Sbjct 201 TTATGCACGTAAGGTGTTCGACGAATTGCCGCAGAGGGGTGTTTCTGTTTATAATTCCAT 260
Query 237 GATTGTGGTTTATTCTCGTGGAAACAA-CCCGAATGAGGTTTTGAAACTTTATGATCAGA 295
|||||||||||||||||||||||| || || | ||||||||||| ||||||||||||||
Sbjct 261 GATTGTGGTTTATTCTCGTGGAAAAAATCCAG-ATGAGGTTTTGCGACTTTATGATCAGA 319
Query 296 TGATATCTGAAAGGGTTAAACCAGATAGCTCAACGTTCACTATAACGATCAAAGCGTGTT 355
||||| |||||| || ||||||||||||||||||||||||| |||||||||||||| |
Sbjct 320 TGATAGCTGAAAAAATTCAACCAGATAGCTCAACGTTCACTATGACGATCAAAGCGTGCT 379
Query 356 TGAGTGGTATGGCTTTAGAGAAAGGAGAAGCTGTATGGAGTAAAGCAGTTGAATTTGGGT 415
| |||||| ||| ||||||||||||||| ||||| ||| |||||||||| || |||||||
Sbjct 380 TAAGTGGTTTGGTTTTAGAGAAAGGAGAGGCTGTGTGGTGTAAAGCAGTGGACTTTGGGT 439
Query 416 ATAAAAATGATGTCTTTGTTTGTTCATCTGTCTTGAATCTGTATATGAAGTGTGGGAAAA 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ATAAAAATGATGTCTTTGTTTGTTCATCTGTCTTGAATCTGTATATGAAGTGTGGGAAAA 499
Query 476 TGAATGAAGCTGAGGTTTTGTTTAGAAAGATGACGAAAAGAGATGTTATTTGCTGGACAA 535
|| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 500 TGGATGAAGCAGAGGTTTTGTTTGGAAAGATGGCGAAAAGAGATGTTATTTGCTGGACAA 559
Query 536 CAATGGTGACAGGATTTGCACAAGG-TGGTAAGTCAATGAAGGCTGTTGAGTTTTACAGA 594
||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||
Sbjct 560 CAATGGTGACAGGGTTTGCACA-GGCTGGTAAGTCGTTGAAGGCTGTTGAGTTTTACAGA 618
Query 595 GAAATGCAGAATGAAGGATTTGGTAGGGATAGGGTTGTGATGTTGGGTCTTTTACAAGCT 654
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 619 GAAATGCAGAATGAAGGGTTTGGTAGGGATAGGGTTGTGATGTTGGGTCTCTTACAAGCT 678
Query 655 TCTGGTGATCTCGGGGATGCGAAAATGGGCCGTTCGGTTCACGGGTATTTG-ATTAGAAC 713
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 679 TCTGGTGATCTCGGGGATACGAAAATGGGCCGTTCGGTTCACGGGTATTTGTAT-AGAAC 737
Query 714 AGGTCTTCCTATAAATACT-GTAGTTGAAACCAGCCTGGTTGATATGTATGCTAAGGTTG 772
|||||||||||| ||| | || ||||||||||||||||||||||||||||| || ||||
Sbjct 738 AGGTCTTCCTATGAATG-TAGTGGTTGAAACCAGCCTGGTTGATATGTATGCAAAAGTTG 796
Query 773 GGTTTATAGAGGTTGCTTCCAGGGTGTTTAGTAGGATGATGTTTAAAACAGCGGTCACGT 832
||||||||||||||||||| ||||||||||||||||||||||||||||| || || |||
Sbjct 797 GGTTTATAGAGGTTGCTTCTAGGGTGTTTAGTAGGATGATGTTTAAAACCGCAGTTTCGT 856
Query 833 GGGGGTCGTTGATCTCTGGATATGCTCAAAATGGATTAGCTAATTATGCTTTTGAAG-TA 891
||||||||||||||||||||| |||||||||||||||||||||| | || ||||||| |
Sbjct 857 GGGGGTCGTTGATCTCTGGATTTGCTCAAAATGGATTAGCTAATAAAGCATTTGAAGCT- 915
Query 892 GTAGTAGAGATGCAGAGCCTTGGGTTTCAACTGGATTTAGCGACTCTTGTTGGAGTACTT 951
|| || || |||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 916 GTTGTGGAAATGCAGAGCCTTGGGTTTCAACCGGATTTAGTGACGCTTGTTGGAGTACTT 975
Query 952 GTGGCGTGTTCGCAAGTTGGGTCATTAACGACTGGTATATCGGTACATTGTTACATTTTG 1011
||||||||||||||||| |||||||||| |||||||| || ||||||||||| ||||||
Sbjct 976 GTGGCGTGTTCGCAAGTCGGGTCATTAAAGACTGGTAGATTAGTACATTGTTATATTTTG 1035
Query 1012 AAAAGGCACGTTCTTGATCGAGTAACCGCGACTGCACTGATGGACATGTATTCAAAATGC 1071
||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 1036 AAAAGGCACGTTCTTGATCGAGTAACCGCAACTGCTTTGATGGACATGTACTCAAAATGT 1095
Query 1072 GGCGCTCTTTCAAGTTCGAGAGTAATCTTTGACCATGTAGGAAGGAAAGACTTGGTTTGT 1131
||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1096 GGCGCTCTTTCAAGTTCAAGAGAAATCTTTGAACATGTAGGAAGGAAAGACTTGGTTTGT 1155
Query 1132 TGGAACACAATGATATCTT 1150
|||||||||||||||||||
Sbjct 1156 TGGAACACAATGATATCTT 1174
Score = 704 bits (381), Expect = 0.0
Identities = 521/589 (88%), Gaps = 8/589 (1%)
Strand=Plus/Plus
Query 1151 TTGTATCAATGTTCCTCAAAATGACGGAAACTAACATAGAACCAGACCACGCCACGTTTG 1210
||||||| |||| ||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1205 TTGTATCGTTGTTTCTCAAAATGACGGAATCAAACATAGAACCCGACCACGCCACGTTTG 1264
Query 1211 CATCCCTTCTCTCTGCTCTTAGCCACTCGGGTCTCGTAGAACAAGGCCAACATTGGTTCA 1270
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 CATCACTTCTCTCTGCTCTTAGCCACTCGGGTCTCGTAGAACAAGGCCAACATTGGTTCA 1324
Query 1271 GCGTCATGATAAACAAATATAATATTCAACCGAGCGAAAAACACTACGTTTGTTTGATCG 1330
|||||||||||||||||||||| || |||||||| ||||| || |||||||||||||| |
Sbjct 1325 GCGTCATGATAAACAAATATAAGATCCAACCGAGTGAAAAGCATTACGTTTGTTTGATTG 1384
Query 1331 ATCTCCTCGCACGTGCAGGGAGAGTTGAAGAAGCTCTTGACATGATAAACTCGGCCAAAC 1390
|||| || ||||||||||||||||| |||||||||||||| ||||||||||| | ||||
Sbjct 1385 ATCTTCTTGCACGTGCAGGGAGAGTCGAAGAAGCTCTTGATATGATAAACTCTGAGAAAC 1444
Query 1391 TTGACAATGCTTTACCCATCTGGGTTGCTCTTCTCTCAGGATGCATCAATCACAGGAATT 1450
|||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||
Sbjct 1445 TTGACAATGCTTTACCAATATGGGTTGCTCTTCTTTCAGGATGCATTAATCACAGGAATC 1504
Query 1451 TATCAGTCGGGGACATCGCGGCTAATAAGATTCTCCAGCTGAATCCAGATAGCACCGGGA 1510
|||||||||||||||| ||||||||||||||||||||| ||||||| ||||| | ||||
Sbjct 1505 TATCAGTCGGGGACATTGCGGCTAATAAGATTCTCCAGTTGAATCCGGATAGTATTGGGA 1564
Query 1511 TCCAAACGCTGGTTTGTAACTTTTTTGCAACTGCGAGA-AAGTGGACGGAAGTGGCCAAA 1569
||||||| ||||||| |||||| ||||||||||| | | ||||||| ||||||||||||
Sbjct 1565 TCCAAACACTGGTTTCTAACTTCTTTGCAACTGCCA-ATAAGTGGAAAGAAGTGGCCAAA 1623
Query 1570 GTGAGGAAATTAATGAGAAATGGGGCCATGGAGAAAGTACCAGGCCAGAGTGTGATTGA- 1628
|||||||| || ||||||||||||||||||||||| ||||||||| | || | ||| ||
Sbjct 1624 GTGAGGAAGTTGATGAGAAATGGGGCCATGGAGAAGGTACCAGGCTACAGCGCGATCGAA 1683
Query 1629 GATGAATGGACAGCTTAGAACTTTTCTCATGGAGGATTTGAACCACCATGAGCATGCTCA 1688
| | ||||| ||||| |||||||||||||||| ||| ||| |||||||| ||| |||
Sbjct 1684 G-TAAATGGGGAGCTTCGAACTTTTCTCATGGAAGATCTGAGTCACCATGAACATTATCA 1742
Query 1689 CATATTGCAAGTGCTGAGAAACTT-AAACTCTGAGATGAAGA-ATGTAT 1735
||| ||||||||| |||| ||||| ||| ||||||| |||| ||||||
Sbjct 1743 CATGTTGCAAGTGTTGAGGAACTTGAAAA-CTGAGAT-AAGAGATGTAT 1789
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87700352115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5