BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916117

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G43910.1 | Symbols:  | P-loop containing nucleoside triphosp...   265    4e-70


> AT1G43910.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr1:16655884-16657658 
REVERSE LENGTH=1624
Length=1624

 Score =  265 bits (143),  Expect = 4e-70
 Identities = 284/350 (81%), Gaps = 18/350 (5%)
 Strand=Plus/Plus

Query  178  TTCCGTGCGGCCGAAGTTTACTTTAAGAT-GC-GTCTTGCCGGACTCTCCACCGGAC-AA  234
            |||||||| || ||||||||| || |  |  | |||| |||||||| || || || | ||
Sbjct  256  TTCCGTGCTGCTGAAGTTTAC-TT-ACCTACCTGTCTCGCCGGACTTTCTACAGG-CAAA  312

Query  235  CTCCTCGTGGGTTCGAGTGATCTCAAGAATCCGGAGGCTGAGCCAAATCTTGGAATCCCT  294
            || || |||||||| ||| |||| |||||||| |  ||||||||||| ||||| ||||||
Sbjct  313  CTTCTTGTGGGTTCAAGTAATCTTAAGAATCCAGCTGCTGAGCCAAAACTTGGTATCCCT  372

Query  295  GTCAACACAAAGATCGTTGATGAGTTTGAAGGGATTCATCTTGAGTGGACTCTACATTGT  354
            || ||||| |||||| ||||| | ||||||||||||||||| || |||||||| || | |
Sbjct  373  GTGAACACTAAGATCATTGATAACTTTGAAGGGATTCATCTAGAATGGACTCTTCACTCT  432

Query  355  GTTG-AGCTTAAG-AGTTATC--CCTTCGAGAAACGGTACTTTAATCTT-ACTTGTAAGA  409
            |||| | | |||| || ||||  ||  ||| |||||||||||| || || || |||||||
Sbjct  433  GTTGAAAC-TAAGAAG-TATCTACC--CGAAAAACGGTACTTTCAT-TTGACATGTAAGA  487

Query  410  AGGAGTTTCGTGAGAAGATAATGACAGATTACTTGACATACATAGCGACATCAGCAGAGA  469
            ||||||||||||||||||||||||| |||||||| || ||| |||||| |||||| ||||
Sbjct  488  AGGAGTTTCGTGAGAAGATAATGACGGATTACTTCACTTACTTAGCGAAATCAGCGGAGA  547

Query  470  AGATAATGAGACATCGTGAAAAGCTCTTCATCTACT-CTTATAGCCGAGA  518
            |||||||||| ||||| || || |||   ||||| | |||||| || |||
Sbjct  548  AGATAATGAGCCATCGCGAGAATCTCAAGATCTA-TACTTATAACCAAGA  596



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5