BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916126

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G06553.1 | Symbols:  | transposable element gene | chr4:3449...   191    7e-48


> AT4G06553.1 | Symbols:  | transposable element gene | chr4:3449949-3452669 
REVERSE LENGTH=2721
Length=2721

 Score =  191 bits (103),  Expect = 7e-48
 Identities = 139/157 (89%), Gaps = 0/157 (0%)
 Strand=Plus/Plus

Query  1    ATGGTACACACGATTGCTGTTTTTGGTGATTGGATGCTAAAGAACGTATGGCACTTTACA  60
            |||||||| || ||||| ||||| ||||| |||||| | ||||||| ||| |  ||||||
Sbjct  843  ATGGTACATACAATTGCAGTTTTAGGTGAATGGATGTTGAAGAACGGATGACTTTTTACA  902

Query  61   ATTGATCAAACCAAAGGCTCCAAATTACTTGTTCTAGTGGATGATATGTCATATGCTGGA  120
             |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct  903  GTTGATCAAACCAAAGGCTGCAAATTACTAGTTCTAGTGGATGATATGTCATATGTTGGA  962

Query  121  CTACTTCAGATAGTTGAAGAAGAATACCAGTTAGATA  157
            ||||||||||||||||||||||||| ||| ||| |||
Sbjct  963  CTACTTCAGATAGTTGAAGAAGAATTCCAATTATATA  999



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26322693028


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5