BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916127
Length=1383
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42370.2 | Symbols: | Calcineurin-like metallo-phosphoester... 1489 0.0
> AT5G42370.2 | Symbols: | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr5:16938981-16941734 REVERSE LENGTH=1981
Length=1981
Score = 1489 bits (806), Expect = 0.0
Identities = 969/1048 (92%), Gaps = 9/1048 (1%)
Strand=Plus/Plus
Query 5 TTGCTTCTAGGGTTTTCTCTTCGATTC-TCA-ATTC-CCA-CCACCGCCTCTCCTTCTGG 60
||||||||||||||||||||||||||| || | || || ||| |||| ||||||
Sbjct 234 TTGCTTCTAGGGTTTTCTCTTCGATTCACCACA-TCGTCATGAACCAAATCTCTTTCTGG 292
Query 61 TGGTTTTCTTTGCT-CTTCACGGTGACGATTGCTGCAGAAGAGACCCCGATCACTCGTAT 119
|| ||||||| || ||| |||||| |||||||||||||||||| || |||||||||||
Sbjct 293 TGCCTTTCTTTACTCCTT-ACGGTGGTGATTGCTGCAGAAGAGACTCCTATCACTCGTAT 351
Query 120 CGCCTTCGGCTCATGTGCTAACCAAAGCGCTCCACAGCCAATATGGGATGCGATAAACAA 179
|||||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 352 AGCCTTCGGATCATGCGCTAATCAAAGTGCTCCACAGCCGATATGGGATGCGATAAACAA 411
Query 180 TTTTGATCCACAATTGTTCATTTGGTTGGGTGATAACATCTATGGAGATATTAGAAGACC 239
|||||||| ||| |||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 412 GTTTGATCCGCAACTGTTTATTTGGTTGGGTGATAACATCTACGGAGATATAAGAAGACC 471
Query 240 ACTTAAAGTCATTGGTAAAGAGAGAACCTTTGGGCCATGGAAGAATACACCGAGGTTTGT 299
||||| ||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||
Sbjct 472 ACTTACAGTCATTGGGAAAGAGAGAACTTTTGGGCCATGGAGGAATTCACCGAGGTTTGT 531
Query 300 GCCTTCTTCAGAGGAAGAAATGAAACTAAGATACGCTAAAGCCAAAGCTAATCCTGGATA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ACCTTCTTCAGAGGAAGAAATGAAACTAAGATACGCTAAAGCCAAAGCTAATCCTGGATA 591
Query 360 TTCTAGTCTTCAGAGAAAGGTTAAGGTTATTGGTACTTGGGATGATCATGATTACGGATT 419
|||| || |||||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct 592 TTCTCGTATTCAGAGAAAAGCTAAGGTTATTGGTACATGGGATGATCATGATTACGGATT 651
Query 420 GAATGACGCCGGAAAAGAGTTTGATCGTAAAGTTACTAACCAAAAACTCATGCTTGATTT 479
||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct 652 GAATGACGCTGGAAAAGAGTTTGATCGTAAAGTCATTAACCAAAAACTTATGCTTGATTT 711
Query 480 CTTGGATGAGCCTCTTGATAGCCCGAGGAGAAAGCAAGCTGGAGTTTATGCATCTTATAC 539
|||| |||||||||||||||| || ||||||||||||||||| |||||||| ||||||||
Sbjct 712 CTTGAATGAGCCTCTTGATAGTCCTAGGAGAAAGCAAGCTGGTGTTTATGCTTCTTATAC 771
Query 540 TTATGGTCCGCCTAATCGGAAAGTTAAGGTTATAGTTTTGGATACTAGATATCATAGAGA 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 772 TTATGGTCCGCCTAATCGGAAAGTTAAGGTTATAGTTTTAGATACTAGATATCATAGAGA 831
Query 600 CCCTTTGCGAAGTGACGGGAGTATCTTGGGTGATACGCAGTGGGACTGGCTCGAAAAAGA 659
|||||| ||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 832 CCCTTTAAGAAGTGACGGGAGCATATTGGGTGATACGCAGTGGGACTGGCTCGAAAATGA 891
Query 660 ATTGAGAGG-CCCACGGAGCGAAATTACTATCATTGGATCATCTGTTCAGGTGATATCAA 718
|||||| || ||| || |||||||| |||||||| ||||| |||||||||||||||||||
Sbjct 892 ATTGAGCGGTCCC-CGAAGCGAAATCACTATCATAGGATCCTCTGTTCAGGTGATATCAA 950
Query 719 ATCTTTCTGCTACCACTGGACCACTCTTTTATATGGAATCATGGGGCCGTTTTCCAAAGG 778
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 951 ATCTTTCTGCTACCACTGGACCTCTCTTTTATATGGAATCATGGGGTCGTTTTCCAAAGG 1010
Query 779 AAAGGAAACGTCTTTTCAAACTGATATCAGACACTAAGAGAAATGGAGTTATATTCATCA 838
|||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||
Sbjct 1011 AAAGGAAACGTCTTTTTAAACTGATAGCAGATACTAAGAGAGATGGAGTTATATTCATCA 1070
Query 839 GTGGAGATGTTCATTTTGGAGAAATCACGAGATACGATTGTTCTGTTGGGTACCCATTAT 898
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1071 GTGGAGATGTACATTTTGGAGAAATCACGAGATATGATTGTTCTGTTGGGTACCCATTAT 1130
Query 899 ATGATGTCACCTCCAGTGGTCTAGTACAATCTGTTGAGAAAGTTTTCCCTCGTCCCTTGC 958
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1131 ATGATGTCACCTCCAGTGGTCTAGTACAATCTGTTGAGAAAGTTGTCCCTCGTCCCTTGC 1190
Query 959 ATTCCATCGTTAGGCTTCTTTTTTGGTATACTCCAAGCACGATGAGAGTTATCAATGATA 1018
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GTTCCATAGTTAGGCTTCTTTTTTGGTATACTCCAAGCACGATGAGAGTTATCAATGATA 1250
Query 1019 ACTGCAAATTCAAATCATGCACATACGG 1046
|||||||||||||||| |||||||||||
Sbjct 1251 ACTGCAAATTCAAATCTTGCACATACGG 1278
Score = 438 bits (237), Expect = 6e-122
Identities = 266/280 (95%), Gaps = 2/280 (1%)
Strand=Plus/Plus
Query 1105 CTCGAGATCAGAGATGTTAACGGACACACAGTACTAGGCACAAATGTTTCATTATCCGAA 1164
|||||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||
Sbjct 1355 CTCGAGATCAGAGATGTTAACGGAGACACTGTACTAGGCACGAATGTTTCATTATCTGAA 1414
Query 1165 CTCCAACCAGGAGGCTCGAATTCTTTGAAAGATGCAACAACAAAGGGAAAGTCCCAACGA 1224
|||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||
Sbjct 1415 CTCCAACCAGGAGGCTCGAATTCTTTAAAAGATACAACAACTAAGGGAAAGTCTCAACGA 1474
Query 1225 TATTGCACACTCGAAATTGAATTACCAGG-ACTGATCAGATACAGATTGGCAGTTCTCAT 1283
||||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||
Sbjct 1475 TATTGCACACTCGAAATTGAATTACCAGGAAC-GACCAGATACCGATTGGCAGTTCTCAT 1533
Query 1284 CTACTTCACCGTTGCTGTCTTGGCAATGGCGATATTAGGACTTATCATTGGAGCTATATT 1343
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1534 CTACTTCACCATTGCTGTCTTGGCAATGGCGATATTAGGACTTATCATTGGAGCTGTATT 1593
Query 1344 GGCCATAACAGCATGCGTTTATAAATGCAAGGTCGATTGA 1383
||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 GGCCATAACAGCATGCGTTTATAAATGCAAGGTCGATTGA 1633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68122139565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5