BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916132
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25090.1 | Symbols: | Riboflavin synthase-like superfamily ... 1138 0.0
AT5G51060.1 | Symbols: RHD2, ATRBOHC, RBOHC | NADPH/respiratory... 518 1e-145
> AT4G25090.1 | Symbols: | Riboflavin synthase-like superfamily
protein | chr4:12878775-12883599 REVERSE LENGTH=2705
Length=2705
Score = 1138 bits (616), Expect = 0.0
Identities = 902/1037 (87%), Gaps = 32/1037 (3%)
Strand=Plus/Plus
Query 870 CAAAGAATGGTACAAGAAAACGACGTGGATGTACTTGGCAGTACCAGTAGCT-TTCTATG 928
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1533 CAAGGAATGGTACAAGAAAACGACGTGGATGTACTTGGCAGTACCAGTAGCTCTT-TATG 1591
Query 929 CATGTGAGAGATTAATACGAGCATTTAGGTCCAAAATGGAG-ACGGTAAAAGTTATTAAG 987
||| |||||||| ||||||||||| ||||||| || || || |||||||| |||||
Sbjct 1592 CATACGAGAGATTGATACGAGCATTCAGGTCCAGCATC-AGGACAGTAAAAGTCCTTAAG 1650
Query 988 GCTG-C-GACTTATCCTGGAAACGTATTGACATTGCACATGTCAAGGCCTACAAACTTCG 1045
|| | | ||||||||||||| |||||||| ||||| ||||||| |||||||||||||
Sbjct 1651 A-TGGCAG-CTTATCCTGGAAAAGTATTGACTTTGCAGATGTCAAAGCCTACAAACTTCA 1708
Query 1046 AATACAAGAGCGGTCAATACATGTTTGTAAACTGTCCAGCAGTCTCACCGTTTGAGTGGC 1105
|||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1709 AATACATGAGCGGCCAATACATGTTTGTAAATTGTCCAGCAGTTTCACCGTTTGAGTGGC 1768
Query 1106 ATCCATTTTCAATAACTTCTGCACCACATGACGAGTATTTAAGTGTTCATATAAAATCAC 1165
|||||||||||||||||||| ||||||| ||||| ||| | || |||||||||||| ||
Sbjct 1769 ATCCATTTTCAATAACTTCTACACCACAAGACGACTATCTGAGCGTTCATATAAAAGCA- 1827
Query 1166 TTGG-AGATTGGACAAAGGCTATCAAAGGAGTTTTCTCCGAGGTATCTATGCCACTTCCG 1224
|||| |||||||||| |||||||| ||||||||||||| ||||| |||| ||||| ||||
Sbjct 1828 TTGGGAGATTGGACAGAGGCTATCCAAGGAGTTTTCTCAGAGGTGTCTAAGCCACCTCCG 1887
Query 1225 GTCGGAGAGATGTCGCATGGTGCAAATAATTCC-GATTTCCCGAGAATTATGATTGATGG 1283
|||||||| |||| | |||||||||||| | || | |||||| | |||||||||||||||
Sbjct 1888 GTCGGAGACATGTTGAATGGTGCAAATAGTCCCCG-TTTCCCCAAAATTATGATTGATGG 1946
Query 1284 TCCGTACGGCGCACCAGCACAAGACTACAAGAAATACGAGGTGGTTCTGCTGATCGGCCT 1343
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || ||
Sbjct 1947 TCCGTACGGCGCACCAGCTCAAGACTACAAGAAGTACGAGGTGGTCCTGCTGATAGGTCT 2006
Query 1344 TGGGATTGGAGCCACCCCAATGATAAGTATTATTAAGGACATAATCAATAATACGGAGAC 1403
||| |||||||||||||| ||||| || ||||| |||||||| || || |||||||||||
Sbjct 2007 TGGCATTGGAGCCACCCCGATGATCAGCATTATCAAGGACATTATTAACAATACGGAGAC 2066
Query 1404 CAAAGAACTTTCTCAAGTTGACCTAGG-GAAGGTGGGATCACAACATGAGCCACAAGGTG 1462
||| |||| |||| | | | || ||||| | ||| | ||| |||| |||||||
Sbjct 2067 CAAGGAACAA-CTCA-GCCAAA-T-GGAGAAGG-G--ATCGCCACAAGAGCAACAAGGT- 2118
Query 1463 AA-AAAGAAACTTTCAAGACGCGAAGGGCTTACTTCTACTGGGTAACAAGGGAGCAAGGC 1521
|| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||
Sbjct 2119 AATAAAGAAACTTTCAAGACTCGAAGGGCTTACTTCTACTGGGTAACAAAGGAGCAGGGC 2178
Query 1522 TCATATGATTGGTTCAAGAACATCATGAACGAGATTGCTGAGCGGGACAAAAATAAAGTC 1581
||| |||||||||||||||||||||||||||||| || || |||||||||| |||||||
Sbjct 2179 ACATTTGATTGGTTCAAGAACATCATGAACGAGATCGCAGAACGGGACAAAAGTAAAGTC 2238
Query 1582 ATAGAACTACACAA-CTATTGCACTAGCGTCTATGAAGAAGGAGACGTTCGTTCAGCGTT 1640
|||||||||||||| | |||||||||| ||||| |||||||||||||||||||| ||| |
Sbjct 2239 ATAGAACTACACAATC-ATTGCACTAGTGTCTACGAAGAAGGAGACGTTCGTTCCGCGCT 2297
Query 1641 CATACATATGCTTCAGTCTCTAAACCATGCCAAGAGTGGTTTAGACATTGTCT-CTGGGA 1699
||||| |||||||||||||| || ||||||||| ||||||||||||||| | ||||||
Sbjct 2298 CATACGGATGCTTCAGTCTCTTAATTATGCCAAGAATGGTTTAGACATTGT-TGCTGGGA 2356
Query 1700 CCAAGGTT-ATGTCCTACTTT-GCCAAACCTAATTGGGAAAACATTTACAAACAGATAGC 1757
| |||| | |||||| | ||| ||| |||||||||| ||||| | ||||||||||||||
Sbjct 2357 C-AAGGGTCATGTCCCA-TTTCGCCCGACCTAATTGGAAAAACGTCTACAAACAGATAGC 2414
Query 1758 CATGGATCACCCTGGCTCTAATGTTGGAGTGTTTTATTGTGGAGCCCCGGCATTGACAAA 1817
|||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||| ||
Sbjct 2415 CATGGATCACCCTGGCGCTAATGTTGGAGTGTTCTATTGTGGAGCACCGGTATTGACGAA 2474
Query 1818 GGAGTTAAGG-AATTTAGCTTTGGAATTCGCACATAAGACAAGAACTAGATTCTCCTTCC 1876
|||||||||| |||| ||||||||||||| |||| ||||| || ||||||||||| ||||
Sbjct 2475 GGAGTTAAGGCAATT-AGCTTTGGAATTCACACACAAGACCAGTACTAGATTCTCTTTCC 2533
Query 1877 ACAAAGAAAACTTTTAA 1893
||||||| ||||| |||
Sbjct 2534 ACAAAGAGAACTTCTAA 2550
Score = 926 bits (501), Expect = 0.0
Identities = 746/863 (86%), Gaps = 22/863 (3%)
Strand=Plus/Plus
Query 21 GATCAT-TAGTCTTAGTTCGTCTGCCAACCATCTTTCAACCAT--AAAGACAAATGCAGA 77
|||||| || |||||||| |||||||| ||||| ||| ||| ||| || || |||||
Sbjct 609 GATCATCAAG-CTTAGTTCTTCTGCCAATCATCTGTCATGCATCCAAA-AC-AAGGCAGA 665
Query 78 TGGATATGCAGCAATGATAATGAAAGTGCTTGACAAAGATAATATTGGATACATCATGAT 137
|| ||||||||||||||||||| ||| ||||||| ||| |||| ||||||||||||||
Sbjct 666 TGAATATGCAGCAATGATAATGGAAGAGCTTGACCCTGATCATATGGGATACATCATGAT 725
Query 138 GG-GTAGTCTTAAA-TCCTTGCTTCTGGAAGCTGAAACACATTCCATCAGCAC----A-- 189
|| | |||| |||| ||||||||| |||| |||||| | || | ||||| |
Sbjct 726 GGAG-AGTC-TAAAGAAATTGCTTCTGCAAGCGGAAACAAAATCTGTAAGCACAGATATT 783
Query 190 AACAGTGAAGAAAGAAAGAAGTTGGGCGACATGATAAGTAACAAG-CTTAAGCCTACACT 248
|| ||||||||||||||| || || |||||||| ||| | | || || ||||||||||
Sbjct 784 AATAGTGAAGAAAGAAAGGAGCTGAGCGACATGCTAACTGA-GAGTCTCAAGCCTACACG 842
Query 249 TGACCCTAACCCGTTGAAGAGATGGTACCATAAACTTAGATTCTTCGTACTGGATAACTG 308
||||||||||| |||| ||||||||| | |||| |||||||| ||| |||||| ||
Sbjct 843 TGACCCTAACCATTTGAGGAGATGGTATTGTCAACTAAGATTCTTTGTATTGGATAGTTG 902
Query 309 GCAAAGAATTTGGGTAATAGTGCTATGGCTCATGATTATGGCCATCCTCTTCATATACAA 368
||||||| ||||||| |||| | ||||||||| ||||||||||||||||||| |||||
Sbjct 903 GCAAAGAGTTTGGGTGATAGCGTTATGGCTCACGATTATGGCCATCCTCTTCGCGTACAA 962
Query 369 ATATATTCAATACAAGAATAGAGAAGTGTATGAAGTGTTGGGGCATTGTGTGTGCTTGGC 428
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 963 GTATATTCAATACAAGAATAGAGCAGTGTATGAAGTGTTGGGGCCTTGTGTGTGCTTGGC 1022
Query 429 TAAAGGTGCAGCTGAGACACTGAAGCTGAACATGGCCTTGATTCTGTTACCTGTATGCAG 488
|||||||||||| ||||| |||||||| ||||||||| | |||||||||||||| |||||
Sbjct 1023 TAAAGGTGCAGCAGAGACGCTGAAGCTAAACATGGCCCTAATTCTGTTACCTGTTTGCAG 1082
Query 489 AAATACCATTACATGGCTTAGAACTAAAACTAGTTTGGGTGTTATTGTCCCTTTTGATGA 548
||||||||| ||||||||||||| ||| ||||| ||||||||| |||| |||||||||||
Sbjct 1083 AAATACCATCACATGGCTTAGAAATAAGACTAGGTTGGGTGTTTTTGTTCCTTTTGATGA 1142
Query 549 CAACCTCAACTTTCATC-AGGTTATAGCGGTGGGAATCATGATAGGAGTAGCCATACACT 607
||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1143 CAACCTCAATTTTCA-CAAGGTTATAGCGGTGGGAATTGCGATAGGAGTAGCCATACACT 1201
Query 608 CGGTGACCCACTTGGCGTGCGATTTTCCACGGCTAATTGCGGCAACTCCAGAGGAATACA 667
| ||| ||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||
Sbjct 1202 CTGTGTCCCACTTGGCGTGTGATTTTCCACTGCTAATCGCGGCAACTCCAGCGGAATACA 1261
Query 668 TGCCTCTAC-GAAAATTCTTTGGAGAAGAGCAACCAAAGAGATACTTGCATTTTGTGAAG 726
||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1262 TGCCTCT-CGGAAAATTCTTCGGAGAGGAGCAACCAAAGAGATACTTGCATTTTGTGAAG 1320
Query 727 TCAACAGAAGGAATAACAGGGCTCATAATGGTTTTCTTGATGGCAATTGCTTTTACACTA 786
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1321 TCAACAGAAGGAATAACAGGGCTTGTAATGGTTTTCTTGATGGTTATTGCTTTTACACTG 1380
Query 787 GCTATCCCTTGGTTTAGACGAGGGAAGCTCGaaaaaaaGCTTCCAGAGCCACTAAAGAAA 846
||||| |||||||||||||| |||||||| || |||||||| |||| |||||||||||||
Sbjct 1381 GCTATGCCTTGGTTTAGACGGGGGAAGCTAGAGAAAAAGCTACCAGGGCCACTAAAGAAA 1440
Query 847 CTAGCTAGCTTCAATGCCTTCTG 869
|| || |||||||||||||||||
Sbjct 1441 CTTGCGAGCTTCAATGCCTTCTG 1463
> AT5G51060.1 | Symbols: RHD2, ATRBOHC, RBOHC | NADPH/respiratory
burst oxidase protein D | chr5:20757284-20762431 REVERSE
LENGTH=3174
Length=3174
Score = 518 bits (280), Expect = 1e-145
Identities = 678/867 (78%), Gaps = 39/867 (4%)
Strand=Plus/Plus
Query 21 GATCATTAGTCTTAGTTCGTCTGCCAACCATCTTTCAACCATAAAG-ACAAATGCAGATG 79
||| || ||||||||| | ||||| || |||| || || ||| || | | | || ||||
Sbjct 1015 GATTATCAGTCTTAGTGCTTCTGCGAATAATCTATCTACAATACAGAAGAGA-GCTGATG 1073
Query 80 GATATGCAGCAATGATAATGAAAGTGCTT-GA-CAAAGATAATATTGGATACATCATGAT 137
|||||||||| |||| ||| ||| | || || | ||| ||||| |||||||||||| |
Sbjct 1074 AATATGCAGCATTGATCATGGAAGAG-TTGGATC-CAGACAATATAGGATACATCATGTT 1131
Query 138 GG-GTAGTCTTAAATCCT-TGCTTCTGGAAGCTGAAACACATTCCATCAGCACAAACAGT 195
|| | |||||| | || ||||| || |||| | |||||| || | | |||| | |
Sbjct 1132 GGAG-AGTCTT-GAGACTCTGCTTTTGCAAGCGGCAACACAGTCTGTGATAACAAGTACT 1189
Query 196 GAAGAAAGAAAGAAGT-TG-GGCGACATGATAAGTAACAAGCTTAAGCCTACACTTGACC 253
| || |||||||| | || | | | ||||| ||| | | |||||||||||| || |||
Sbjct 1190 GGGGAGAGAAAGAA-TCTGAGTC-ATATGATGAGTCAGAGGCTTAAGCCTACGTTTAACC 1247
Query 254 -CTAACCCGTTGAAGAGATGGTACCATAAACTTAGATTCTTCGTACTGGATAACTGGCAA 312
| |||||||||||| ||||||||| | |||||||||||| | | || |||||||||
Sbjct 1248 GC-AACCCGTTGAAGCGATGGTACCGTGGTCTTAGATTCTTCTTGTTAGACAACTGGCAA 1306
Query 313 AGAAT-TTGGGTAATAGTGCTATGGCTCATGA-TTATGGCCATCCTCTTCATATACAAAT 370
|| || |||||| |||||||||||| |||| | ||||||| || ||||||| |||||||
Sbjct 1307 AG-ATGTTGGGTTATAGTGCTATGGTTCAT-AGTTATGGCTATACTCTTCACCTACAAAT 1364
Query 371 ATATTCAATACAAGAATAGAGAAGTGTATGAAGTGTTGGG-GCATTGTGTGTGCTTGGCT 429
|||| ||||||| | ||| |||||| |||| |||| | ||||||||||| |||||
Sbjct 1365 ATATCCAATACAGGCGTAGCCCTGTGTATCCAGTGATGGGTG-ATTGTGTGTGCATGGCT 1423
Query 430 AAAGGTGCAGCTGAGACACTGAAGCTGAACATGGCCTTGATTCTGTTACCTGTATGCAGA 489
|||||||| || || ||| |||||||||||||||| |||||||| |||||||| || |||
Sbjct 1424 AAAGGTGCTGCAGAAACAGTGAAGCTGAACATGGCTTTGATTCTCTTACCTGTTTGTAGA 1483
Query 490 AATACCATTACATGGCTTAGAACTAAAACTAGTTTGGGT-GTTATTGTCCCTTTTGATGA 548
|| ||||| ||||||||||||| ||| || || |||||| | | ||||||| ||||||||
Sbjct 1484 AACACCATCACATGGCTTAGAAATAAGACCAGGTTGGGTCG-TGTTGTCCCATTTGATGA 1542
Query 549 CAACCTCAACTTTCATC-AGGTTATAGCGGTGGGAATCATGA-TAGGAGTAGCCATACAC 606
||| |||||||| || | |||||||||||||||| || || | | |||||| | || |||
Sbjct 1543 CAATCTCAACTTCCA-CAAGGTTATAGCGGTGGGGATTAT-AGTTGGAGTAACGATGCAC 1600
Query 607 -TCGGTGACCCACTTGGCGTGCGATTTTCCACGGCTAATTGC-GGCAACTCCAGAGGAAT 664
||| | | || || ||||| ||||| || ||| | | | | ||||||||||||| ||
Sbjct 1601 GCCGG-GGCACATTTAGCGTGTGATTTCCCGCGG-TTACTACATGCAACTCCAGAGGCAT 1658
Query 665 ACATGCCTCTACGAAAATTCTTTGGAGAAGAGCAACCAAAGAGATACTTGCATTTTGTGA 724
| | |||| || || | || ||||| || |||||||||||||| |||| ||||||||| |
Sbjct 1659 ATAGGCCTTTAAGACAGTTTTTTGGGGATGAGCAACCAAAGAGCTACTGGCATTTTGTAA 1718
Query 725 AGTCAACAGAAGGAATAACAGGGCTCATAATGGTTTTCTTGATGGCAATTGCTTTTACAC 784
| || |||||| ||||| || || | |||||||| || ||||| ||||| || ||||
Sbjct 1719 ACTCGGTAGAAGGTATAACCGGACTTGTGATGGTTTTGTTAATGGCGATTGCATTCACAC 1778
Query 785 TAGCTATC-CCTTGGTTTAGACGAGGGAAGCTCGaaaaaaaGCTTCCA-GAGCCACTAAA 842
|||| | | |||||||| ||| |||||||||| ||| | |||||| || ||| ||||
Sbjct 1779 TAGCCA-CGCCTTGGTTCAGAAGAGGGAAGCT---AAACTATCTTCCAGGA-CCATTAAA 1833
Query 843 GAAACTAGCTAGCTTCAATGCCTTCTG 869
|||||||||||||||||||||||||||
Sbjct 1834 GAAACTAGCTAGCTTCAATGCCTTCTG 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93724417515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5