BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916168

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G45050.1 | Symbols: GATA2 | GATA transcription factor 2 | ch...   274    4e-73


> AT2G45050.1 | Symbols: GATA2 | GATA transcription factor 2 | 
chr2:18582872-18584083 FORWARD LENGTH=1119
Length=1119

 Score =  274 bits (148),  Expect = 4e-73
 Identities = 174/186 (94%), Gaps = 3/186 (2%)
 Strand=Plus/Minus

Query  166  GGGAACGCAAATGTCGTGGAGGAAGGAGTGATGATCGGCGGAGGAAGGGAGATGGTGGTG  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  GGGAACGCAAATGTCGTGGAGGAAGGAGTGATGATCGGCGGAGGAAGGGAGATGGTGGTG  243

Query  226  GTGGAAATTAGGGTTTTGAGGAGG-G--AAAGAAAAAGAGGAACTAGCGGCGGTGGAACC  282
            ||||||| |||||||||||||||| |  |||||| |||||||| ||||||||||||||||
Sbjct  242  GTGGAAACTAGGGTTTTGAGGAGGAGGGAAAGAAGAAGAGGAAGTAGCGGCGGTGGAACC  183

Query  283  ACAGGAAGAATACGTGGAGAAGATATCTTCGTTGGAGAAATCAAGAAGGTTGTCGATTCG  342
            || ||||||| | | ||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct  182  ACCGGAAGAAGAAGCGGAGAAGATGTCTTCGTTGGAGAAATCAAGAAGGTCGTCGATTCG  123

Query  343  AAGTAA  348
            ||||||
Sbjct  122  AAGTAA  117



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5