BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916171
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42170.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1053 0.0
> AT5G42170.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr5:16848786-16851707 FORWARD LENGTH=1110
Length=1110
Score = 1053 bits (570), Expect = 0.0
Identities = 731/809 (90%), Gaps = 10/809 (1%)
Strand=Plus/Plus
Query 85 GAAAGACTAGGAATAGCAGAAGCAATACCAGCATATTTAAATCCAAAGCTCAAAAATGAA 144
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 307 GAAAGACTAGGAATAGCAGAAACAATACCAGCATATTTAAATCCAAAGCTCAAAAATGAA 366
Query 145 GATCTTCTCAAGGGTATAAATTTCGCTTCTGGTGGTTCTGGTTACGATCCATTAACAGCT 204
||||||||||||||| | ||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 367 GATCTTCTCAAGGGTGTGAATTTTGCTTCAGGTGGTTCTGGTTACGATCCGTTAACAGCA 426
Query 205 AAACTAGTGAAAGTGGTATCTTTATCAGATCAACTAAAATATTTTCAAGAGTATAAAGAA 264
|||||||||||||||||||| |||||||||||||||||| |||| ||||| |||||| ||
Sbjct 427 AAACTAGTGAAAGTGGTATCGTTATCAGATCAACTAAAAAATTTCCAAGAATATAAA-AA 485
Query 265 AAAATAAAAGGA-ATAGTTGGCGAAGAGAAAGCCAATTTCATAGTGAAAAATAGTCTTTA 323
|||| ||||| || ||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 486 TAAATTAAAGGTGATTGTTGGCGAAGAGAAAGCTAATTTCTTGGTGAAAAATAGTCTTTA 545
Query 324 CCTCGTGGTAGCCAGCAGTAATGATATTGCTCATACATATACGGCACGGTC-ACTCAAAT 382
|| |||||||||||||||||||||||||||||||| ||||||||||| || | ||||||
Sbjct 546 TCTTGTGGTAGCCAGCAGTAATGATATTGCTCATACCTATACGGCACGCTCCA-TCAAAT 604
Query 383 ATAACAGAACTTCATATGCTGATTATTTGGCTGGTTTCT-CTTCTGAATTTGTCAGAG-A 440
|||||| |||||||||||||||||||||||||| || || ||||| |||||||||| | |
Sbjct 605 ATAACAAAACTTCATATGCTGATTATTTGGCTGATT-CTGCTTCTAAATTTGTCAGTGCA 663
Query 441 GTTATATGGACTTGGAGCTCGAAGAATCGGAGTATTTAGTGCAGTACCAGTTGGATGTGT 500
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 664 -TTGTATGGACTTGGAGCTCGAAGAATCGGAGTATTTAGTGCAGTACCGGTTGGATGTGT 722
Query 501 ACCAGCAGCCAGAACAGTTCATGGAAGATTAAAGCGAAAATGTTCAGACAAACTAAACGA 560
||||||||| |||||| ||| ||||| ||| ||||||| ||| ||||| ||||| |||||
Sbjct 723 ACCAGCAGCTAGAACACTTCGTGGAAAATTGAAGCGAAGATGCTCAGAAAAACTTAACGA 782
Query 561 AGTGGCTCGTCA-CTTCAACGTAAAGATGTTTCCGACATTGGAGGCTTTAGGAAAAGAGT 619
||||||||| || ||| |||| ||||| | ||| |||||||| ||||||||||||||||
Sbjct 783 AGTGGCTCG-CAACTTTAACGCGAAGATATCTCCAACATTGGAAGCTTTAGGAAAAGAGT 841
Query 620 TGCCGGATAGCAAAATTGCGTTTATTGACGTATATGACACTCTTAATGATATGATCGAAA 679
|||| ||||||| | ||| ||| |||||||| | ||||||||||||||| ||||| ||||
Sbjct 842 TGCCAGATAGCAGAGTTGTGTTAATTGACGTGTGTGACACTCTTAATGACATGATAGAAA 901
Query 680 ACCCTAAAAACTATGGATTTGAAGTATCAAACAGAGGATGTTGTGGAACAGGATTACTTG 739
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| | |
Sbjct 902 ACCCTAAAAACTACGGATTTGAAGTATCAAACAGAGGATGCTGTGGAACCGGATTAGTCG 961
Query 740 AAGTACTCTTTTTGTGCAACAAAATCAATCCTTTTACATGCAAAAATTCATCTTCTTATA 799
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 962 AAGTACTATTTTTATGCAACAAAATCAATCCTTTTACATGCAAAAATTCATCTTCGTATA 1021
Query 800 TATTTTGGGACAGTTACCATCCAACAGAAAAAGCTTACCAAATTATCGTTGATAAGTTGT 859
| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1022 TTTTTTGGGATAGTTACCATCCAACAGAAAAAGCTTACCAAATAATAGTTGATAAGTTGT 1081
Query 860 TAGGAAAATACATTAAGCAACTAGTCTAA 888
||||||| ||||||| | |||||||||||
Sbjct 1082 TAGGAAATTACATTACGAAACTAGTCTAA 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5