BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916172

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42170.1 | Symbols:  | SGNH hydrolase-type esterase superfam...   459    1e-128


> AT5G42170.1 | Symbols:  | SGNH hydrolase-type esterase superfamily 
protein | chr5:16848786-16851707 FORWARD LENGTH=1110
Length=1110

 Score =  459 bits (248),  Expect = 1e-128
 Identities = 284/302 (94%), Gaps = 0/302 (0%)
 Strand=Plus/Plus

Query  1    ATGTCACGTTTGGTGTATATAATCTTTTTGCTTGTAGTGGTAGAAGGTAGCAGGAACACT  60
            |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCACGTTTGGTGTATGTAATATTTTTGCTTGTAGTGGTAGAAGGTAGCAGGAACACT  60

Query  61   TTAGATCAAAATACTGAAACCAACGCATCAGAAGCCAAAGTAGAAGGTATATGTACAATA  120
            ||||| | ||||||||||||||||||| ||||||||||||||||||||| | ||||||||
Sbjct  61   TTAGAACGAAATACTGAAACCAACGCAACAGAAGCCAAAGTAGAAGGTAAAGGTACAATA  120

Query  121  AAACTACCCCCAAATGTTTCCATTCCCGGTGTCATAACATTTGGAGACTCAATAGTGGAT  180
            |||||||| || |||||| ||||||| ||| |||||||||||||||| |||||||| || 
Sbjct  121  AAACTACCGCCGAATGTTACCATTCCTGGTATCATAACATTTGGAGATTCAATAGTTGAC  180

Query  181  AGTGGAAACAATAACCACCTCCGTACAGCATTAAAATGTAACTTTCCTCCTTATGGTAAA  240
            |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  181  AGTGGAAACAATAACCACCTTCGTACAGCATTAAAATGTAACTTTCCTCCTTACGGTAAA  240

Query  241  GATTTTCCAGGCAAAATTGCTACTGGAAGATTTTCTGATGGAAGGGTTCCATCTGATATT  300
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GATTTTCCTGGCAAAATTGCTACTGGAAGATTTTCTGATGGAAGGGTTCCATCTGATATT  300

Query  301  GT  302
            ||
Sbjct  301  GT  302



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16739160417


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5