BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916187

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4...   217    1e-55


> AT4G24230.6 | Symbols: ACBP3 | acyl-CoA-binding domain 3 | chr4:12566935-12568754 
REVERSE LENGTH=1288
Length=1288

 Score =  217 bits (117),  Expect = 1e-55
 Identities = 168/190 (88%), Gaps = 13/190 (7%)
 Strand=Plus/Plus

Query  342  GGAATTGAGAGGAGTGAACTTGAGAAAGCCTTTGCAGCTGCTG----------GAAAG-A  390
            ||||||||||||||||||||||||||||||||||| |||||||          | ||| |
Sbjct  673  GGAATTGAGAGGAGTGAACTTGAGAAAGCCTTTGCGGCTGCTGTAAATCTTTTGGAAGAA  732

Query  391  TCCGGGAAAG-TGGAAGAAGTTGGTGCTGATGCTAAGATGGAGTTGTTCGGCCTTCACAA  449
            |||||||||| | |||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct  733  TCCGGGAAAGCT-GAAGAAATTGGTGCTGAAGCTAAGATGGAGTTGTTTGGCCTTCACAA  791

Query  450  GATCGCCACTGAAGGGTCATGTAGAGAGGCACAGCCCATGGCCGTCATGGTCACTGCTCG  509
            ||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||
Sbjct  792  GATCGCCACTGAAGGGTCATGTAGAGAGGCACAACCTATGGCCGTCATGATCTCTGCTCG  851

Query  510  TGCCAAATGG  519
            ||||||||||
Sbjct  852  TGCCAAATGG  861



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5