BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916207
Length=2268
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47940.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1094 0.0
> AT5G47940.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:19409242-19411893
REVERSE LENGTH=2415
Length=2415
Score = 1094 bits (592), Expect = 0.0
Identities = 799/898 (89%), Gaps = 17/898 (2%)
Strand=Plus/Plus
Query 1381 ATCAGTAATGAGGAGGTTGGTTATACTTTTGAAGAGAAACCAAAACATTCGCTGTCTATA 1440
||||||||||||||||||||| || | |||||||||||||||||||||||| ||||||||
Sbjct 1360 ATCAGTAATGAGGAGGTTGGTCATTCATTTGAAGAGAAACCAAAACATTCGTTGTCTATA 1419
Query 1441 AATGATGCTTTAGCATCTGCACTTGCTGGATTATTGTCTTCGCATTCGATGACCAG-TGG 1499
||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | |||
Sbjct 1420 AATGATGCTTTAGCATCTGCACTTGCTGGGTTATTGTCTTCACATTCGATCACC-GATGG 1478
Query 1500 AAAATACAGCCAAGCCCTCGTAGTTACAGCCCCAGAATTTTCAAATGAAGATGATGTAGA 1559
||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||| ||
Sbjct 1479 AAAATACAGTCAAGCCCTCGTAATTACAGCCCCAGAATTTTCAAGTGAAGATGATGTGGA 1538
Query 1560 GATAGAAGAGAAATCTCAGG-TGAGTACCCTTCCAGACGAAAGCCAAGTTGCAGCAGAGG 1618
||||||||||||| || || |||| ||| ||||||||| |||||||||||||||||||
Sbjct 1539 GATAGAAGAGAAACCT-GGGACGAGTGCCCATCCAGACGATAGCCAAGTTGCAGCAGAGG 1597
Query 1619 AGTCTGAAAACACATACTCTGCTT-C--GGGGAACCCAAGTTCTTCACTGAAAGGACTTG 1675
|||||||||||| |||||| ||| | || || | | | ||| |||| |||| ||
Sbjct 1598 AGTCTGAAAACAGGTACTCTTCTTCCTTGGAGAGCTCTACTTCGTCACAGAAA-GA-GCC 1655
Query 1676 CTTCATGTATTGAAGACAATTCTCA-GGAAATGATTTATGGAGTTTCTAAAAAATTGGAT 1734
| || || | |||| ||||||| || || ||| |||||||||| ||||||| |||||
Sbjct 1656 CGGAAT-TACTCCAGACGATTCTCATGG-AACGATGTATGGAGTTTTTAAAAAACTGGAT 1713
Query 1735 GATAGTTTTGGAGGAGATGAGGAAGCTGAGACAGTGGTTAGCGTCAGAGACAATGCTTTA 1794
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1714 GATAGTTTTGGAGGAGATGAGGAAGCTGAGACTGTGGTTAGCGTCAGCGACAATGCTTTA 1773
Query 1795 GATGTAGAGACGGTAACATCAAGCACAAAAGCTGATTGTTACACAGAAAGGGAGAACCTC 1854
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1774 GATGAAGAGACGGTAACATCAAGCACAAAAGCTGATTGTTACACAGAAAGGGAAAACCTC 1833
Query 1855 AGTGATAAGCCCATGGATCCCGATTCCCTGATTCACGAGATCGAGAATCCAAATTTAACT 1914
||| |||| |||| ||| || |||||||||||||||||| |||||| | ||||| |||||
Sbjct 1834 AGTTATAAACCCACGGAACCTGATTCCCTGATTCACGAGCTCGAGAGTTCAAATGTAACT 1893
Query 1915 AGTC-CAAAATGCAAAGGAGAGCCTGAAATGGATGATGTCTTGAAGAGTGTTCTCGGTTT 1973
| | |||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1894 AC-CGCAAAATGCAAAGGAGAGCCTTCAATGGATGATGTCTTGAAGAGTGTTCTAGGTTT 1952
Query 1974 TCAACCGACTACGTCTTCAGTTGACTTCCTAACTCCAGTTCTGGATGTGAAATTTAATTC 2033
|||||||||||| ||||| || || |||||||| ||||| |||||||||||||||||||
Sbjct 1953 TCAACCGACTACTTCTTCGGTCGATTTCCTAACACCAGTCCTGGATGTGAAATTTAATTT 2012
Query 2034 AGAGAATAAAGACTCAGACAGCAAGTGTTTCTTTGAGGCACTCTTCACAGAAGAATCTAA 2093
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct 2013 AGAGAATAAAGACTCAGACAGCAAGTATTTCTTTGAGGTACTCTTCACAGAAGAATCGAA 2072
Query 2094 AACTGATGTAGATTGCAAGAACGAAGCTTTTGAAGATAACTTAGTCTCAGTGGAAGATGA 2153
|||| ||||||||||||||||||| | |||||| ||||||||||||||||||||||||||
Sbjct 2073 AACTTATGTAGATTGCAAGAACGATGTTTTTGATGATAACTTAGTCTCAGTGGAAGATGA 2132
Query 2154 AGAA---CTAAAAGGCCCACCAACAGATACCCTTTCATCTATGGAGATGGATCACTATGC 2210
|||| || ||||| |||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 2133 AGAAGAACTCAAAGGACCACCAACAGATACCCTTTCGTCTGTGGAGATGAATCACTATGC 2192
Query 2211 GATTAACGAGATGCCTCTACACTGGAATGGTGACATATCAGAAGCAAGTCTTATATAA 2268
|| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2193 GACGAACGAGATGCCTATACACTGGAATGGTGAAATATCAGAAGCGAGTCTTATATAA 2250
Score = 566 bits (306), Expect = 4e-160
Identities = 449/515 (87%), Gaps = 22/515 (4%)
Strand=Plus/Plus
Query 1 ATGGATGCGACCAACCACGACGACGATTTCAATTCTACCACAAACTGGAAACTCGCCGGC 60
|||| ||| | ||| ||||| |||||||||||||||| |||||||||||||||| || |
Sbjct 1 ATGGGTGCAAGCAATCACGATAACGATTTCAATTCTACGACAAACTGGAAACTCGTCGAC 60
Query 61 GGTGCCCTCACAGACTCCATCTCCTTTGAGTCTTCCTTCACCGCAAACGATGAATCTGAC 120
||| | |||| |||| ||||||| ||||| || |||||||| |||||| |||||||||
Sbjct 61 GGTACACTCATAGACGCCATCTCATTTGAATCCTCCTTCACTGCAAACCCCGAATCTGAC 120
Query 121 GATGGAATCATCTCCGCCGCCGTCAATCATGTAACCAAATCCCCCTTACTTCTTCTCCCT 180
|| ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 121 GACGGAATCATCTCTGCCGCCGTCGATCATGTAACCAAATCCCCGTTACTTCTTCTCCCT 180
Query 181 CCAGTTCCCAACGGCGAGCCATGTGAAATTACAATTACATTTGCACAAGAACATGAATTG 240
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGGTTCCCAACGGCGAGCCTTGTGAAATTACAATTACATTTGCACAAGAACATGAATT- 239
Query 241 AA-GCAAATCTATATCCGAAGTAGTGCACGAGTATACGAAGTGTATTACACGAAAAAGCG 299
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAGGCAAATCTACATCCGAAGTAGTGCACGAGTATACGAAGTGTATTACACGAAAAAGCG 299
Query 300 GCGACATGATAAGGAATATTTGTGTACTGTTCGATGTGGTGTTGCAATTAGAGATGAAGA 359
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGACATGATAAGGAATATCTGTGTACTGTTCGATGTGGTGTTGCAATTAGAGATGAAGA 359
Query 360 AGTGCTTCAGAG---T-T--CAG--T--G--GA----A--CCGGTAAAGGATCCGATTGA 401
||||||||||| | | ||| | | || | || ||||||||| ||| ||
Sbjct 360 AGTGCTTCAGATCCCTCTTACAGAGTCAGCTGATTCTAAACCAGTAAAGGATTTGATCGA 419
Query 402 GAAGAGGGT-GAAAGTTAATGGGAATGGACGGATGAATGAAGATGATTGGGTTGAAGTGA 460
|| || ||| | | | |||||| |||||||||| || ||||||||||||||||||||||
Sbjct 420 GAGGAAGGTTGCA-GATAATGGTAATGGACGGACGAGCGAAGATGATTGGGTTGAAGTGA 478
Query 461 AAGCTGGTGATGATTCTCTGCTGAATAATGAAAAA 495
||||| |||||||||||||| ||||||||||||||
Sbjct 479 AAGCTAGTGATGATTCTCTGTTGAATAATGAAAAA 513
Score = 523 bits (283), Expect = 2e-147
Identities = 354/387 (91%), Gaps = 9/387 (2%)
Strand=Plus/Plus
Query 878 CTGATCAGATAGGAGAGAGCTCACCAGTTTTAGTTGATACTCTTCCAAAGCGGGTTGATG 937
||||||||||||||| ||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 827 CTGATCAGATAGGAGTGAGCTCACCAGTTTTAGTTGATACTGTTGCAAAGCAGGTTGATG 886
Query 938 CAGTAACACGAGTATCTGGGGCAGAAATCAAGCCTGCTCTGTCTTGCAATAATGTGGAGA 997
||| ||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||
Sbjct 887 CAGCAACACGAGTATCTGGAGCAGAAAGCAAGCCTGCTATACCTTGCAATAATGTGGAGA 946
Query 998 CTATTCTGTATCAGCTTGTTAACAAGGTAAGCATGATAGAAACTATCTTGATAAGATTTG 1057
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 947 CTATTCTGAATCAGCTTGTTAACAAGGTAAGTATGATAGAAACTATCTTGATAAGATTTG 1006
Query 1058 AAGATCAGATGTTGAAGCCTATTAATAGTATTGATGCAAGGCTCCAGTTAGTAGAGAAGA 1117
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1007 AAGATCAGATGTTGAAACCTATTAATAGTATTGATGCAAGGCTCCAGTTAGTTGAGAAGA 1066
Query 1118 AACTCGAACAGCTAGGAAAGAAGAAATCATTTGAATCTGAATTAGATTTTC-AAGTGAAA 1176
|||||||||||||||||||||| | |||||||||||||| || | ||||| || ||||
Sbjct 1067 AACTCGAACAGCTAGGAAAGAA-A--TCATTTGAATCTGATTTGGGTTTTCGAAC-GAAA 1122
Query 1177 ATGCC-ATATCCAGATTCTCTGGGCAGTGATACAGATAAAACTCCTGATACCGATGAGT- 1234
|| || | ||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1123 ATACCCA-ATCAAGATTCTCTGCGCAGTGATACTGATAAAACTCCTGATACCGATGAGAG 1181
Query 1235 TGGATGGATTGACTATAAACACGGATG 1261
|| |||||||||||| |||||||||||
Sbjct 1182 TG-ATGGATTGACTAAAAACACGGATG 1207
Score = 464 bits (251), Expect = 2e-129
Identities = 294/315 (93%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 523 AAACAGGTTTTTTATGAAGCTACTGCAGAGATCAATGACGCAGAACCTTGCACTTCGATT 582
||||||| |||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 511 AAACAGGATTTTTATGAAGCTACTGCGGAGATCAATGATGCGGAACCTTGCACTTCGATT 570
Query 583 ACAGTCCGTCTTCTCTCTCTTCAGGATAAAAGATGTGCACTTGTTGATGAAGTTTATGTG 642
||||| ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 571 ACAGTTCGTCTCCTCTCCCTTCAGGATAAAAGATGTGCACTTGTAGATGAAGTTTATGTA 630
Query 643 TTTGCTGATCCTGTTGATCCAAGTGAGTCAGAGAAGGAAGAAGCAAGTGGAACAGGAAAT 702
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 631 TTTGCTGATCCTGTTGATCCAAGTGAGTCAGAGAAGGAAGAAGCAACTGGAACAGGAAAT 690
Query 703 TCATCTAGTAGTTCGTTGATGGCAATGTTTATGCCCGCTCTTTTGCAGCTATCTCGAGGA 762
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 691 TCATCTAGTAGTTCGTTGATGGCTATGTTTATGCCTGCTCTTTTGCAGCTATCTCGAGGA 750
Query 763 AAAGATGTTAGAAAAGAACGGGATAGACAAGTTTCCGATGAGTCCAACAGCAC-GAATCC 821
|||||||| |||||||||||||||| |||||||||||| |||||||||| || || |||
Sbjct 751 AAAGATGTCAGAAAAGAACGGGATATACAAGTTTCCGACAAGTCCAACAGTACAGA-TCC 809
Query 822 AGTAGATTTAGGAAA 836
||||| | |||||||
Sbjct 810 AGTAGCTATAGGAAA 824
Score = 145 bits (78), Expect = 2e-33
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1294 GTTCTTGACTCCTCTAGTATAGACAACAGTGAAGATTGTTCTGTTGTACTACCGAAGAAC 1353
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1210 GTTCCTGACTCCTCTAGTATAGACAACAGTGAAGATTGTGCTGTTGTACTACCGAAGAAC 1269
Query 1354 AGGCTTGATAATATTCTTCCAAAGTCT 1380
|||||||||||||||||| ||||||||
Sbjct 1270 AGGCTTGATAATATTCTTTCAAAGTCT 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112549621890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5