BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916244

Length=1512
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G79280.2 | Symbols: NUA | nuclear pore anchor | chr1:2981914...   350    3e-95


> AT1G79280.2 | Symbols: NUA | nuclear pore anchor | chr1:29819142-29833016 
REVERSE LENGTH=6589
Length=6589

 Score =  350 bits (189),  Expect = 3e-95
 Identities = 224/241 (93%), Gaps = 2/241 (1%)
 Strand=Plus/Plus

Query  134   GGAGTGAAATAATTGCAATAAGGTCTGAGCGGGATAAGTTGGCGATGGGGGCATATTTTG  193
             |||||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||||
Sbjct  2324  GGAGTGAAGTAATTGCAATAAGGTCTGAACGGGATAAGTTGGCGATGGAGGCAAATTTTG  2383

Query  194   CTACGGAAAAACTAGAGGGCGTCATGAAAGAATCTGAATGCAAGAGAGAAGAAATGAACG  253
             ||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||  
Sbjct  2384  CTAGGGAAAAATTAGAGGGCATCATGAAAGAATCTGAACGCAAGAGAGAAGAAATGAATA  2443

Query  254   GCGTTTTGGCAAGAAACATAGAG-TCTTCACAGCTAATCATTGACCACCAGAGGAAATTA  312
             ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| 
Sbjct  2444  GCGTTTTGGCAAGAAACATAGAGTTC-TCACAGCTAATCATTGACCACCAGAGGAAATTG  2502

Query  313   AGTGAGAATTCCGAGTCTCTGCACGCAGCGGAAGAGATCTCCAGAAAATTATCTATGGAG  372
              | ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2503  CGCGAGAGCTCCGAGTCTCTGCACGCAGCGGAAGAGATCTCCAGAAAATTATCTATGGAG  2562

Query  373   G  373
             |
Sbjct  2563  G  2563


 Score =  303 bits (164),  Expect = 2e-81
 Identities = 188/199 (94%), Gaps = 4/199 (2%)
 Strand=Plus/Plus

Query  371   AGGCTACCTTGGATACTGTACAAAGTACAGAGGAAGTTCGTGAGGAAGCAAGAGCTGCCG  430
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  2660  AGGCTACCTTGGATACTGTACAAAGTACAGAGGAAGTTCGTGAGGAAACAAGAGCTGCCG  2719

Query  431   AGAGAAGGAAACAAGAGGAGCATATCAAGCAACTTGAGAGAGAA-GGGCTGAAGCTAAAA  489
             ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| ||||
Sbjct  2720  AGAGAAGGAAACAAGAGGAGCATATTAAGCAACTTCAGAGAGAATGGGCTGAAGCCAAAA  2779

Query  490   A-GAATTGCAAGAAGAAAGGAGCAATGCACGG-ACTATTACTTTGGACCGCAATCAAACT  547
             | |||||||||||||||||||||||||||||| | | |||||| |||||| |||||||||
Sbjct  2780  AAGAATTGCAAGAAGAAAGGAGCAATGCACGGGATT-TTACTTCGGACCGGAATCAAACT  2838

Query  548   TTGAACAATGCTGTAATGC  566
             |||||||||||||||||||
Sbjct  2839  TTGAACAATGCTGTAATGC  2857


 Score =  183 bits (99),  Expect = 3e-45
 Identities = 106/109 (97%), Gaps = 2/109 (2%)
 Strand=Plus/Plus

Query  1281  AAGGAGAACGAAGACCTTAAAACAAAAACTTGAGAAGTGTGAAGCAGAAATTGAGAAAAC  1340
             |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1216  AAGGAGAACGGAGACCTT-AAACAAAAACTTGAGAAGTGTGAAGCAGAAATTGAGAAAAC  1274

Query  1341  TAGGAAAACAGATGAGCTAAATCTTGATACCTTTCAGCAATTTCACAAG  1389
             |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1275  TAGGAAAACAGATGAGCTAAATCT-GATACCTTTCAGCAATTTCACAAG  1322


 Score =  167 bits (90),  Expect = 3e-40
 Identities = 99/103 (96%), Gaps = 2/103 (2%)
 Strand=Plus/Plus

Query  1390  CTGGCCAAAATTTATGAGAAGTATCATGAGGCTGTTGATGCCTTGAGGCATGAGCAATTA  1449
             |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct  1444  CTGGCCAAAATTTATGAGAAGTATCAGGAGGCTGTTGATGCCATGAGGCATGAGCAATTA  1503

Query  1450  GGTAGAAAGGAAGCTGAGATGATACTTCAACGGGTTGT-ATCC  1491
             ||||||||||||||||||||||||||||||||||| || ||||
Sbjct  1504  GGTAGAAAGGAAGCTGAGATGATACTTCAACGGGT-GTTATCC  1545


 Score =  106 bits (57),  Expect = 7e-22
 Identities = 71/78 (91%), Gaps = 0/78 (0%)
 Strand=Plus/Plus

Query  12    AGACGAAGCTACTAAAAGAGCCCAAGAAAAAGCTTTTGAATGCATTTTGAGTCTCGAAGA  71
             ||| |||||||||||||||||||||||||||||||||||| ||||   || |||||||||
Sbjct  2247  AGAGGAAGCTACTAAAAGAGCCCAAGAAAAAGCTTTTGAACGCATCCGGATTCTCGAAGA  2306

Query  72    AGATTTTGCAAAGGCTAG  89
             ||||||||| ||||||||
Sbjct  2307  AGATTTTGCGAAGGCTAG  2324


 Score =  102 bits (55),  Expect = 9e-21
 Identities = 57/58 (98%), Gaps = 0/58 (0%)
 Strand=Plus/Plus

Query  747   GGAAGAAATTGAAAAATTGAGGGGAGAAGTAGAATCTAGCAAAAGCCACATGCTCCAG  804
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  3126  GGAAGAAATTGAAAAATTGAGGGGAGAAGTAGAATCTAGTAAAAGCCACATGCTCCAG  3183



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 74598009870


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5