BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916249
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24090.1 | Symbols: | glutamine-fructose-6-phosphate transa... 1875 0.0
> AT3G24090.1 | Symbols: | glutamine-fructose-6-phosphate transaminase
(isomerizing)s;sugar binding;transaminases | chr3:8697838-8700971
REVERSE LENGTH=2034
Length=2034
Score = 1875 bits (1015), Expect = 0.0
Identities = 1205/1295 (93%), Gaps = 19/1295 (1%)
Strand=Plus/Plus
Query 65 AGAGACGATACATTCTCGA-GATTCTCTTCAATGGTCTTCGTCGTCTTGAATACAGAGGC 123
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 44 AGAGACGATACATTCTCGATG-TTCTCTTCAATGGTCTTCGTCGTCTTGAATACAGAGGC 102
Query 124 TATGATTCAGCTGGAATCGCAATTGATGATTCTTCAACAATCTCTTCCCCTCCTCTTGTG 183
|| ||||| ||||||||||| |||||| ||||||| | | ||||| ||||||| |||
Sbjct 103 TACGATTCTGCTGGAATCGCCATTGATAATTCTTC-TC-CT-TCTTCTTCTCCTCTCGTG 159
Query 184 TTTCGTCAAGCAGGAAACATTGAATCACTCGTTAATTCTGTAAACGAAGAGATTACGAAT 243
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 160 TTTCGTCAAGCAGGAAACATTGAATCACTTGTTAATTCCGTTAACGAAGAGATTACGAAT 219
Query 244 ACAGATTT-AAACTTAGATGAAGTTTTCTACTTTCATGCTGGAATTGCACATACTAGATG 302
|| ||||| || | |||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 220 ACGGATTTGAATC-TAGACGAAGTTTTCTACTTTCATGCTGGAATTGCACATACGAGGTG 278
Query 303 GGCTACACATGGTGAGCCAGCTCCAAGGAATAGTCATCCTCAATCTTCTGGTCCTGGAGA 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GGCTACTCATGGTGAGCCAGCTCCAAGGAATAGTCATCCTCAATCTTCTGGTCCTGGAGA 338
Query 363 TGATTTTTTGGTGGTTCATAATGGTGTTATCACTAATTATGAGGTGTTGAAAGAAACTTT 422
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 339 TGATTTTTTGGTGGTTCATAATGGTGTTATCACTAACTATGAGGTATTGAAAGAAACGTT 398
Query 423 AGTGAGGCATGGATTTACTTTTGATTCGGATACAGATACTGAGGTTATACCAAAGCTTGC 482
|||||||||||||||||||||||| ||||| ||||||||||| || || || ||||||||
Sbjct 399 AGTGAGGCATGGATTTACTTTTGAATCGGACACAGATACTGAAGTAATTCCTAAGCTTGC 458
Query 483 TAAATTTGTTTTTGACAAAGCTAATGAAGAA-GT-----TACTGTTCA-ATTTTGTGAAG 535
||| ||||||||||||||||||||||||||| || |||||| | ||| |||||||
Sbjct 459 TAAGTTTGTTTTTGACAAAGCTAATGAAGAAGGTGGACAAACTGTT-ACATTCTGTGAAG 517
Query 536 TTGTCTTTGAAGTGATGAGGCATCTTGAAGGAGCTTATGCTCTTATATTTAAAAGCTGGC 595
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TTGTGTTTGAAGTGATGAGGCATCTTGAAGGAGCTTATGCTCTTATATTTAAAAGCTGGC 577
Query 596 ATTACCCGAACGAGTTGATTGCGTGCAAGCTTGGTAGCCCGTTGCTTTTAGGTGTTAAAG 655
|||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 578 ATTATCCGAATGAGTTAATTGCGTGCAAGCTTGGTAGTCCATTGCTTTTAGGTGTTAAAG 637
Query 656 AGCTAGATCAAGGCAAGAGCAATAGTCATGTTTTTCAAGATGCTCACTTTCTTTCTAAGA 715
||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 638 AGCTAGATCAAGGTGAGAGCAATAGTCATGTTTTCCAAGATGCTCACTTTCTATCTAAGA 697
Query 716 ATGACCATCCCAAGGAATTTTTCCTATCAAGTGATCCGCATGCTCTTGTTGAGCACACAA 775
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 698 ATGACCATCCCAAGGAGTTTTTCCTATCAAGTGATCCACATGCTCTTGTTGAGCACACAA 757
Query 776 AGAAAGTTTTGGTGATTGAAGATGGCGAAGTTGTTCAC-CTCAAGGATGGAGGTGTGA-C 833
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |
Sbjct 758 AGAAAGTTTTGGTGATTGAAGATGGCGAAGTTGT-CAATCTCAAGGATGGAGGTGT-ATC 815
Query 834 TATACTTAAGTCTGAAAACGAGAGGGGAAGGCGTAATGGTATATCGAGAATTGCTTCAGT 893
|||||||||| |||||| |||||||||||| |||||||| |||||||| |||||||||
Sbjct 816 AATACTTAAGTTTGAAAATGAGAGGGGAAGGTGTAATGGTTTATCGAGACCTGCTTCAGT 875
Query 894 GGAACGTGCATTATCTGTTTTAGAAATGGAGGTGGAGCAAATAAACAAGGGAAAATATGA 953
||||||||| ||||||||| |||| |||||||| |||||||||| |||||||||||||||
Sbjct 876 GGAACGTGCCTTATCTGTTCTAGAGATGGAGGTAGAGCAAATAAGCAAGGGAAAATATGA 935
Query 954 TCATTACATGCAAAAAGAAATCCACGAGCAGCCGGAATCTTTAACTACCACAATGAGAGG 1013
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 936 TCATTACATGCAAAAGGAAATCCACGAGCAGCCAGAATCTTTAACTACTACAATGAGAGG 995
Query 1014 CCGACTTATACGCGGTGGTTCACGCAAAACAAAAACAGTCCTCCTAGGTGGGTTGAAAGA 1073
|||||||||||||||||||||||| ||||| ||||| |||||| |||||||| |||||||
Sbjct 996 CCGACTTATACGCGGTGGTTCACGTAAAACGAAAACCGTCCTCTTAGGTGGGCTGAAAGA 1055
Query 1074 TCACTTAAAGACCATAAGACGCAGCCGGCGTATAGTTTTTATTGGGTGTGGGACAAGTTA 1133
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1056 TCACCTAAAGACCATAAGACGCAGCCGGCGTATAGTTTTTATTGGATGTGGGACAAGTTA 1115
Query 1134 CAACGCCGCTCTTGCATCAAGACCTATCCTTGAAGAACTCTCTGGTATACCAGTCAGCAT 1193
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1116 CAATGCCGCTCTTGCATCAAGACCTATCCTTGAAGAACTCTCTGGTATACCAGTCAGTAT 1175
Query 1194 GGAGATTGCTAGTGATCTCTGGGACCGGCAAGGTCCAATATACAGAGAAGATACTGCGGT 1253
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1176 GGAGATTGCTAGTGATCTATGGGACCGGCAAGGTCCAATATACAGAGAAGATACCGCGGT 1235
Query 1254 GTTTGTGAGTCAGTCTGGTGAAACCGCAGATACACTACTTGCTTTGGACTATGCTCGGGA 1313
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1236 GTTTGTGAGTCAGTCTGGTGAAACTGCAGATACACTACTTGCTTTGGACTATGCTCGAGA 1295
Query 1314 AAACGGTGCATTATGTGTCGGCATAACTAACACCG 1348
|||||||||||||||||||||||||||||||||||
Sbjct 1296 AAACGGTGCATTATGTGTCGGCATAACTAACACCG 1330
Score = 953 bits (516), Expect = 0.0
Identities = 589/625 (94%), Gaps = 2/625 (0%)
Strand=Plus/Plus
Query 1348 GCATACACAAGACAGATTGAGGGACT-GTATAGGGTAGCTTTAGCAATTGGAAGTGACAC 1406
||||| ||||| ||||||| || | | ||| | | ||||||||||||| |||||||||||
Sbjct 1411 GCATATACAAGTCAGATTGTGGTAATGGTA-ATGCTAGCTTTAGCAATAGGAAGTGACAC 1469
Query 1407 AATCTCCAGCCAAAAGAGACGGGAAGCTATAATCGATGGACTACTTGATTTGCCGTATAA 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 AATCTCCAGCCAAAAGAGACGGGAAGCTATAATCGATGGACTACTTGATTTGCCGTATAA 1529
Query 1467 GGTTAAGGAAGTACTAAAGCTGGACGAGGAAATGAAAGATCTCGCACAACTTTTGATAGA 1526
||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1530 GGTTAAGGAAGTACTAAAGCTAGACGATGAAATGAAAGATCTCGCGCAACTCTTGATAGA 1589
Query 1527 CGAGCAGTCACTGCTTGTGTTTGGCAGAGGATACAACTACGCAACAGCTTTAGAAGGAGC 1586
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 CGAGCAGTCACTGCTAGTGTTTGGCAGAGGATACAACTACGCAACAGCTTTAGAAGGAGC 1649
Query 1587 ATTGAAAGTAAAAGAAGTAGCACTTATGCATAGTGAAGGAATACTAGCAGGAGAAATGAA 1646
||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1650 ATTAAAAGTAAAAGAAGTAGCACTTATGCACAGTGAAGGAATACTTGCAGGAGAAATGAA 1709
Query 1647 ACATGGACCTTTAGCTTTAGTTGATGAGAATCTTCCCATTGCTGTGATCGCCACTCGTGA 1706
|||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||
Sbjct 1710 ACATGGACCTTTAGCTTTGGTTGATGAGAATCTCCCCATAGCTGTGATTGCCACTCGTGA 1769
Query 1707 TGCTTGTTTCAGCAAACAACAGTCTGTGATTCAGCAACTTCACGCACGCAAAGGGAGATT 1766
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1770 TGCTTGTTTCAGTAAACAACAATCTGTGATTCAGCAACTTCACGCACGCAAAGGGAGACT 1829
Query 1767 AATAGTAATGTGCTCAAAAGGTGATGCTGCATCAGTAAGCTCGAGTGGATCTTGTCGAGC 1826
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1830 AATAGTAATGTGCTCAAAAGGTGATGCTGCATCGGTAAGCTCGAGTGGTTCTTGTCGAGC 1889
Query 1827 TATTGAAGTTCCTCATGTGGAAGATTGTTTACAACCGGTTGTCAATATAGTGCCATTACA 1886
||| ||||||||||| || ||||||||||||||||| ||| | |||||||||||||||||
Sbjct 1890 TATCGAAGTTCCTCAAGTTGAAGATTGTTTACAACCTGTTATTAATATAGTGCCATTACA 1949
Query 1887 GTTGTTGGCTTATCATCTGACTGTTTTGAGAGGTCACAACGTTGATCAACCGAGGAATCT 1946
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1950 GTTGTTGGCTTATCATCTGACTGTTTTGAGAGGTCACAATGTTGATCAACCGAGGAATCT 2009
Query 1947 GGCGAAGAGCGTGACTACTCAATAG 1971
||| ||||| |||||||||||||||
Sbjct 2010 GGCAAAGAGTGTGACTACTCAATAG 2034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97640060025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5