BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916255

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24070.1 | Symbols:  | Zinc knuckle (CCHC-type) family prote...   399    1e-110


> AT3G24070.1 | Symbols:  | Zinc knuckle (CCHC-type) family protein 
| chr3:8693085-8694709 FORWARD LENGTH=1625
Length=1625

 Score =  399 bits (216),  Expect = 1e-110
 Identities = 339/397 (85%), Gaps = 14/397 (4%)
 Strand=Plus/Plus

Query  1    ATGTGGTTGAGGATTCGTGGAATTCCGATTCGGTATCTTTGTGAAGGAACGGTTCGTGAG  60
            |||||||||| ||||||||| |||||||||| |||||||||||| || ||||||||||||
Sbjct  459  ATGTGGTTGAAGATTCGTGGGATTCCGATTCAGTATCTTTGTGATGGGACGGTTCGTGAG  518

Query  61   ATTGCTTCGTCTATGGGGGAAATAATGGAGGTTGAATTGGATGATGTGAAAT--TTGATT  118
            ||||||||||||||||| ||  ||||||| |||||||| ||||||| ||| |  ||||||
Sbjct  519  ATTGCTTCGTCTATGGGTGAGGTAATGGAAGTTGAATTAGATGATG-GAA-TGGTTGATT  576

Query  119  TTCGTTTTGTGCGTGTTCGTGTGAACGTTTCTGTGGATACTCGTTTGTGTTTTAAGAAAG  178
            |  ||| |||||||| ||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct  577  TGAGTTCTGTGCGTGCTCGTGTGAATGTTTGTGTGGATACACGTTTGTGTTTTAAGAAAG  636

Query  179  TGGTTAGGTTTGGTTCTGGTGAGGTTAGGATTGTGAGTTTGAGGTATGAGGATATTGCT-  237
            |||  ||||||| |||||| ||||||| |||||||||||| |||||||||||||||| | 
Sbjct  637  TGGCGAGGTTTGATTCTGGAGAGGTTAAGATTGTGAGTTTTAGGTATGAGGATATTGGTA  696

Query  238  TGGAGTAAAGTTAG-TTTCAAGTTTTATCGTAATTGTGGTGGTT-TGAATCATCTCGCTA  295
            || |||||||  || ||| ||||||| |  ||||||||| || | |||||||| | ||||
Sbjct  697  TG-AGTAAAGCGAGGTTT-AAGTTTTGTTTTAATTGTGG-GGATATGAATCATTTGGCTA  753

Query  296  GGTCTTGTTCGCGTGT-TTGGGTTGATGTTCCTGATCCTTATGATCGTGCTCTTTCACCA  354
            ||  ||||| |  |   ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct  754  GGAATTGTTTGA-TCCCTTGGGTTGATGTTCCTGATCCTTATGAACGTTCTCTTTCACCA  812

Query  355  CCGCCTCTTGATTCTAGCGT-TGATGGTTCTGGTGAG  390
            ||||||| ||| |||| | | ||||||||||| ||||
Sbjct  813  CCGCCTCATGAGTCTAAC-TCTGATGGTTCTGCTGAG  848



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36871863898


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5