BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916256
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24080.1 | Symbols: | KRR1 family protein | chr3:8694961-86... 1535 0.0
> AT3G24080.1 | Symbols: | KRR1 family protein | chr3:8694961-8697124
REVERSE LENGTH=2164
Length=2164
Score = 1535 bits (831), Expect = 0.0
Identities = 1468/1752 (84%), Gaps = 137/1752 (8%)
Strand=Plus/Plus
Query 202 TCTGAGCCAGATGATGAT-TTAGGAGATCCAAAAAACGATGTCAAATTCATCGATGTT-T 259
|||||||| ||| |||| || ||| ||||| ||| | || |||||||| | ||| || |
Sbjct 207 TCTGAGCCGGATTCTGATCTT-GGAAATCCAGAAAGCAATCTCAAATTCGTTGAT-TTGT 264
Query 260 TGCTTAAGGTAAAGAAAAAGGATCCT-TTGATTAAGAACAAAGATGTTAACTTCTAtgag 318
|| ||||||||||||||||||||||| || |||||| ||||||||| ||| |||||||||
Sbjct 265 TGATTAAGGTAAAGAAAAAGGATCCTATT-ATTAAGGACAAAGATGCTAAGTTCTATGAG 323
Query 319 -agtgatgaaga-ag-a-tg-ag--gct-aag--gagaagaagg-t--gaagaagaagaa 365
| |||||| || || | || || | | | | || ||||||| | ||| ||||||||
Sbjct 324 TA-TGATGATGAGAGTAGTGAAGAAGATGAGGTTGATAAGAAGGATACGAAAAAGAAGAA 382
Query 366 gaagaagaagaagaTGTATTTGAAAGATGTTCAGGCACAGCAATTGATTGAAGAAGGTCC 425
|||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||||
Sbjct 383 GAAGAAGAAGAAGATGTATTTGAAAGATGTTCAGGCACAGCATTTGCTTGAGGGAGGTCC 442
Query 426 TGAGTTTGTTGAGGAAGATGAGGAGAGGAGGAAGGTTAAGAGTTACGCTGA-GAGGCAAG 484
||||||||||||||||||||||||||||| || |||| || ||||||||| || || ||
Sbjct 443 TGAGTTTGTTGAGGAAGATGAGGAGAGGA--AA-GTTAGGACTTACGCTGAGGA-GC-AG 497
Query 485 -AGGAATTGAGGAAAGCTGTAACTGATGCTTTGG-AA---G-A--G---GAGAGTGATGA 533
| ||| |||||||||||| |||||||| |||| || | | | ||||||| |||
Sbjct 498 AAAGAAACGAGGAAAGCTGTGACTGATGC-TTGGAAAGCTGAAGGGAACGAGAGTGGTGA 556
Query 534 AGATGGTGAAGATTTATTGAGAGTTGCGGAGAAGGAAGGAGATGATGATGTGGA----G- 588
||| ||| ||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 557 AGA---TGATGATTTTTTGAGAGTTGTGGAGAAGGAAGGAGATGATGATGTGGAGGTTGA 613
Query 589 -GAGGAGCTAGCTAAGAAAATTGATGAGTATT-TCGGTGAAGAACG-TGAAGTG-T-TTG 643
|||||| ||||||||||||| |||||||||| | ||||| ||| | || || | | ||
Sbjct 614 TGAGGAGTTAGCTAAGAAAATGGATGAGTATTAT-GGTGATGAA-GCTG-AG-GCTACTG 669
Query 644 AGAATCAGTTTTTGAAAGATTACTTGGTGAAACAGTTGTGGAAGGAGAAAGATGAGAAGA 703
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 670 AGAATCAGTTTTTGAAAGATTACTTGGTGAAACAGTTGTGGAAGGAGAAAGA-G-G-AGA 726
Query 704 TTGTAATAGATGAAGAAGATTTGAAGGAG-T---T--GGATGA--A-GA----T--G--- 745
|| || ||||||||| ||||||||| | | |||||| | || | |
Sbjct 727 GGGTTCCAGGTGAAGAAGAGTTGAAGGAGTTGAGTGAGGATGATCACGAGGTTTGGGATC 786
Query 746 AGGAAGCTGTTGA-GAAGCAAGA-----GGA-TTATGAGACTACCTATAGACATG-A-A- 795
|||| | | |||| | || |||| ||| |||| | | | |||||| |||| | |
Sbjct 787 AGGAGGATTTTGAGGCAGGAAGACCGTTGGATTTATTA-A--A-CTATAGGCATGAAGAT 842
Query 796 GAGAATGCTGGGGAGATTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGAGGAAG 855
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GAGAATGCTGGGGACACTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGAGGAAG 902
Query 856 AAGGATAATGCGAGGAAGGCGCAGAGGAAGAGTAAAGAGGAGAGGATGAAGATGGATGA- 914
||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| ||
Sbjct 903 AAGGATAATGCGAGGAAGGCGCAGAGGAAGAATAAAGACGAGAGGATGAAGAAGGAGGAT 962
Query 915 GATTGAGAGGCAAGTGGAGTTGAAGCGGTTGAAGAATGTTAAGAAGAAGGAGATGAAGGA 974
||| | |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 963 GAT-GTGAGGAAAGAGGAGTTGAAGCGGTTGAAGAATGTTAAGAAGAAGGAGATTAAGGA 1021
Query 975 GAGGATGAAGAAAGTGCTTTCTATTGCTGGTTTTAAGGATGGTGAAGAATGTCCTTTGGA 1034
|| ||||||||| ||||||||| ||||||||||||||||||| ||||| ||||| || ||
Sbjct 1022 GAAGATGAAGAAGGTGCTTTCTGTTGCTGGTTTTAAGGATGGAGAAGAGTGTCCGTTAGA 1081
Query 1035 TGCGAAAGACTTGgatgatgagtttgatcctgaggagtatgatatgatgatgaaagctgc 1094
||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1082 TGCCAAAGATTTTGATGATGAGTTTGATCCTGAGGAGTATGATAAGATGATGAAAGCTGC 1141
Query 1095 gtttgatgatgatTACTATGGTGCGGAGGATTCAGATTTGAATAGTGATGAGGATGATGG 1154
|||||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1142 GTTTGATGATAAGTACTATGGTGAGGAGGATTCGGATTTGAATAGTGATGAGGATGATGA 1201
Query 1155 TG-AGA-AA-CCAGACTTTGACAAGGAGGATGAATTGCTTGGACTTCCCAAAGATTGGGG 1211
|| ||| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1202 TGGAGAGAAACCAGATTTTGACAAGGAAGATGAATTGCTTGGACTTCCTAAAGATTGGGA 1261
Query 1212 TGTGATTCAAGGTGGGGATGGTTTTATATCTGCTAGAGAAAAGGTTTTGAAGCATATGGA 1271
||||| | |||||||||||| |||| | | || |||||||||||||||||||||| |||
Sbjct 1262 TGTGACTAAAGGTGGGGATGTTTTTGCAGCCGCAAGAGAAAAGGTTTTGAAGCATAAGGA 1321
Query 1272 GAA--TGGTGC-TGGTGATgaagaagaagaagaagaagaagaagaagaagaagta-gaag 1327
|| || || | ||||||||||||||||||||| ||||| ||||| |||| | ||||
Sbjct 1322 AAACATGTTGGGTATTGATGAAGAAGAAGAAGAAGATGAAGAGGAAGAGGAAG-ACGAAG 1380
Query 1328 aagaagaagaagtcgatgaggagaaggaagtggagggtaagaggaagagaaagcggaaAA 1387
||||||| ||||| |||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 1381 AAGAAGAGGAAGTAGATGAGGAGAAGGAGGCAGAGGGTAAGAGGAAGAGAAAGCGAAAAA 1440
Query 1388 CATCTCTTGTACAAAGAGCC-AAGGAAGCTATGTTGGAGGAGTACTACAAGCTAGACTAT 1446
| ||||||||||||| || | || |||||| || |||||||||||||||||||||| |||
Sbjct 1441 CGTCTCTTGTACAAA-AGACGAAAGAAGCTTTGATGGAGGAGTACTACAAGCTAGATTAT 1499
Query 1447 GAGGATACAATTGGAGATTTGAAAACAAGGTTTAAGTATGCGAAAGTACAACCAAACAAA 1506
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1500 GAGGATACAATTGGAGAATTGAGAACAAGGTTTAAGTATGCGAAAGTACAACCAAACAGA 1559
Query 1507 TTCGCCCTGGATACAGGAGAGATACTCTTC-TTAGATGACACAGAGCTGAACCAGTACGT 1565
|| | |||||||||||||||||||| | | ||||||||| ||||||||||||| || ||
Sbjct 1560 TTTGAACTGGATACAGGAGAGATACT-TACCTTAGATGACGCAGAGCTGAACCAATATGT 1618
Query 1566 ACCATTGAAGAAGATGGCTCCTTATGTGGAAAAGGATTGGGAGGTGAATAGACACAAGGT 1625
||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1619 GCCATTGAAGAAAATGGCTCCTTATGTGGAAAAGGATTGGGAGGTGAATAGGCATAAGGT 1678
Query 1626 CAAGGAGCAGAAACTTAAGATCCAGG-AGTTGTTGCAGGGTGAACGCCATGAAAAGAAAA 1684
|||||||||||||| ||||||| ||| |||||| | ||||| ||| | |||| |||||||
Sbjct 1679 CAAGGAGCAGAAACGTAAGATC-AGGGAGTTGTGGGAGGGTAAACACGATGAGAAGAAAA 1737
Query 1685 GCAAGAAGAGGAAGAAGAACGATGTTGTTGAGG--AAACGAA-ACC-AAC-A--CAGAA- 1736
||||||||||||||||||| |||||||||||| |||| || ||| || | | ||
Sbjct 1738 GCAAGAAGAGGAAGAAGAATGATGTTGTTGAGACCAAACCAACACCGAAAGAGGCTGAGG 1797
Query 1737 ---AG-CAGA---TGAGGA--AGGC-GAAGCTGAGAC-GA-----AG-CTA---T--CGA 1774
|| | || ||||| |||| || |||||| | || || ||| | |||
Sbjct 1798 CTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTAAACTATCGA 1857
Query 1775 AAAAGGCAAAGAGAAGAAGGCGTCGAGCAGAGAAGAAGCTTCCTCCTAATAGAATGGCTG 1834
|||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1858 GAAAGGCCAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTCCTAGCAGAATGGCTG 1917
Query 1835 CTTATGG-AAAG 1845
| ||||| ||||
Sbjct 1918 CGTATGGGAAAG 1929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91615994625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5