BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916257
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24090.1 | Symbols: | glutamine-fructose-6-phosphate transa... 1402 0.0
> AT3G24090.1 | Symbols: | glutamine-fructose-6-phosphate transaminase
(isomerizing)s;sugar binding;transaminases | chr3:8697838-8700971
REVERSE LENGTH=2034
Length=2034
Score = 1402 bits (759), Expect = 0.0
Identities = 827/861 (96%), Gaps = 0/861 (0%)
Strand=Plus/Plus
Query 562 ATGGAGATTGCTAGTGATCTCTGGGACCGGCAAGGTCCAATATACAGAGAAGATACTGCG 621
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1174 ATGGAGATTGCTAGTGATCTATGGGACCGGCAAGGTCCAATATACAGAGAAGATACCGCG 1233
Query 622 GTGTTTGTGAGTCAGTCTGGTGAAACCGCAGATACACTACTTGCTTTGGACTATGCTCGG 681
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1234 GTGTTTGTGAGTCAGTCTGGTGAAACTGCAGATACACTACTTGCTTTGGACTATGCTCGA 1293
Query 682 GAAAACGGTGCATTATGTGTCGGCATAACTAACACCGTTGGGAGCTCGATAGCTAGAAAA 741
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1294 GAAAACGGTGCATTATGTGTCGGCATAACTAACACCGTTGGGAGCTCCATAGCTAGAAAA 1353
Query 742 ACACACTGTGGTGTTCATATAAACGCAGGAGCTGAGATTGGTGTCGCAAGTACAAAGGCA 801
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 ACACACTGTGGTGTCCATATAAACGCAGGAGCTGAGATTGGTGTCGCAAGTACAAAGGCA 1413
Query 802 TACACAAGTCAGATTGTGGTAATGGTTATGCTAGCTTTAGCAATTGGAAGTGACACAATC 861
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1414 TATACAAGTCAGATTGTGGTAATGGTAATGCTAGCTTTAGCAATAGGAAGTGACACAATC 1473
Query 862 TCCAGCCAAAAGAGACGGGAAGCTATAATCGATGGACTACCTGATTTGCCGTATAAGGTT 921
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1474 TCCAGCCAAAAGAGACGGGAAGCTATAATCGATGGACTACTTGATTTGCCGTATAAGGTT 1533
Query 922 AAGGAAGTACTAAAGCTGGACGAGGAAATGAAAGATCTCGCACAACTTTTGATAGACGAG 981
||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1534 AAGGAAGTACTAAAGCTAGACGATGAAATGAAAGATCTCGCGCAACTCTTGATAGACGAG 1593
Query 982 CAGTCACTGCTTGTGTTTGGCAGAGGATACAACTACGCAACAGCTTTAGAAGGAGCATTG 1041
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 CAGTCACTGCTAGTGTTTGGCAGAGGATACAACTACGCAACAGCTTTAGAAGGAGCATTA 1653
Query 1042 AAAGTAAAAGAAGTAGCACTTATGCATAGTGAAGGAATACTAGCAGGAGAAATGAAACAT 1101
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1654 AAAGTAAAAGAAGTAGCACTTATGCACAGTGAAGGAATACTTGCAGGAGAAATGAAACAT 1713
Query 1102 GGACCTTTAGCTTTAGCTGATGAGAATCTTCCCATTGCTGTGATTGCCACTCGTGATGCT 1161
|||||||||||||| | |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1714 GGACCTTTAGCTTTGGTTGATGAGAATCTCCCCATAGCTGTGATTGCCACTCGTGATGCT 1773
Query 1162 TGTTTCAGCAAACAACAGTCTGTGATTCAGCAACTTCACGCACGCAAAGGGAGATTAATA 1221
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1774 TGTTTCAGTAAACAACAATCTGTGATTCAGCAACTTCACGCACGCAAAGGGAGACTAATA 1833
Query 1222 GTAATGTGCTCAAAAGGTGATGCTGCATCAGTAAGCTCGAGTGGATCTTGTCGAGCAATC 1281
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 1834 GTAATGTGCTCAAAAGGTGATGCTGCATCGGTAAGCTCGAGTGGTTCTTGTCGAGCTATC 1893
Query 1282 GAAGTACCTCAAGTTGAAGATTGTTTACAACCTGTTCTTAATATAGTACCATTACAGTTA 1341
||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1894 GAAGTTCCTCAAGTTGAAGATTGTTTACAACCTGTTATTAATATAGTGCCATTACAGTTG 1953
Query 1342 TTGGCTTATCATCTGACTGTTTTGAGAGGTCACAACGTTGATCAACCGAGGAATCTGGCG 1401
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1954 TTGGCTTATCATCTGACTGTTTTGAGAGGTCACAATGTTGATCAACCGAGGAATCTGGCA 2013
Query 1402 AAGAGTGTGACTACTCAATAG 1422
|||||||||||||||||||||
Sbjct 2014 AAGAGTGTGACTACTCAATAG 2034
Score = 553 bits (299), Expect = 2e-156
Identities = 363/393 (92%), Gaps = 7/393 (2%)
Strand=Plus/Plus
Query 1 ATGTGTGGAATCTTCGCGTATTTGAATTTTCACGCTAACAAAGAGAGACGATACATTCTC 60
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTGTGGAATCTTCGCGTATCTGAATTTTCACGCGAACAAAGAGAGACGATACATTCTC 60
Query 61 GA-GATTCTCTTCAATGGTCTTCGTCGTCTTGAATACAGAGGCTATGATTCAGCTGGAAT 119
|| | |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 61 GATG-TTCTCTTCAATGGTCTTCGTCGTCTTGAATACAGAGGCTACGATTCTGCTGGAAT 119
Query 120 CGCAATTGATGATTCTTCAACAATCTCTTCCCCTCCTCTTGTGTTTCGTCAAGCAGGAAA 179
||| |||||| ||||||| | | ||||| ||||||| ||||||||||||||||||||
Sbjct 120 CGCCATTGATAATTCTTC-TC-CT-TCTTCTTCTCCTCTCGTGTTTCGTCAAGCAGGAAA 176
Query 180 CATTGAATCACTCGTTAATTCTGTAAACGAAGAGATTACGAATACAGATTT-AAACTTAG 238
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || | |||
Sbjct 177 CATTGAATCACTTGTTAATTCCGTTAACGAAGAGATTACGAATACGGATTTGAATC-TAG 235
Query 239 ATGAAGTTTTCTACTTTCATGCTGGAATTGCACATACTAGATGGGCTACACATGGTGAGC 298
| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 236 ACGAAGTTTTCTACTTTCATGCTGGAATTGCACATACGAGGTGGGCTACTCATGGTGAGC 295
Query 299 CAGCTCCAAGGAATAGTCATCCTCAATCTTCTGGTCCTGGAGATGATTTTTTGGTGGTTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CAGCTCCAAGGAATAGTCATCCTCAATCTTCTGGTCCTGGAGATGATTTTTTGGTGGTTC 355
Query 359 ATAATGGTGTTATCACTAATTATGAGATACTGA 391
||||||||||||||||||| |||||| || |||
Sbjct 356 ATAATGGTGTTATCACTAACTATGAGGTATTGA 388
Score = 189 bits (102), Expect = 6e-47
Identities = 116/123 (94%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 439 GAAGTTGTCTTTGAAGTGATGAGGCATCTTGAAGGAGCTTATGCTCTTATATATAAAAGC 498
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 514 GAAGTTGTGTTTGAAGTGATGAGGCATCTTGAAGGAGCTTATGCTCTTATATTTAAAAGC 573
Query 499 TGGCATTACCCGAACGAGTTGATTGCGTGCAAGCTTGGTAGCCCGTTGCTTTTAGGTGTT 558
|||||||| ||||| ||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 574 TGGCATTATCCGAATGAGTTAATTGCGTGCAAGCTTGGTAGTCCATTGCTTTTAGGTGTT 633
Query 559 AAA 561
|||
Sbjct 634 AAA 636
Score = 76.8 bits (41), Expect = 5e-13
Identities = 54/60 (90%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 383 AGATACTGAGGTTATACCAAAGCTTGCTAAAATTTGTTTTTGACAAAGCTAATGAAGAAG 442
||||||||| || || || ||||||||| || ||||||||||||||||||||||||||||
Sbjct 432 AGATACTGAAGTAATTCCTAAGCTTGCT-AAGTTTGTTTTTGACAAAGCTAATGAAGAAG 490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5