BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916259
Length=1767
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 233 4e-60
> AT1G70770.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317
Score = 233 bits (126), Expect = 4e-60
Identities = 199/234 (85%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 544 GAAGGAAATCCTGTTTTAGCCAAGGAAGCTACAGAAATTGCTATCGGGTCTTTGACCGCA 603
|||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||
Sbjct 1413 GAAGGAAATCCTGTTTTAGCCAAGGAAGCTACAGCAATTGCTATCTGGTCTGTGACC-CA 1471
Query 604 AATGTT-GATTGCTTTAAGCAGTGGGACATTCTATATAAGGAGAACCTAGAAGCTAGTGT 662
|| || ||||||| ||||| ||||||| ||| || |||||||| || |||||||||||
Sbjct 1472 AAACTTTGATTGCTGCAAGCACTGGGACAATCTCTACAAGGAGAATCTGGAAGCTAGTGT 1531
Query 663 TGTTCTTCTTAAAAAGCTTGTAGACGAATGGAAGGATCATTCTCTCAAACTAAT-ATCAA 721
|| | |||||||||||||||| || |||||||| || ||||| |||||||| | ||||
Sbjct 1532 TGCTGTTCTTAAAAAGCTTGTTGAAGAATGGAAAGAGCATTCGGTCAAACTA-TCATCAT 1590
Query 722 CACC-AAGTGATACTCTCACCCTCAATCGGGCCATGAATAGCTTCAGGCTAAAG 774
|||| || |||| ||||||| ||||| || | ||||| |||||||||||||||
Sbjct 1591 CACCGAA-TGATGCTCTCACTCTCAACCGAACTATGAAAAGCTTCAGGCTAAAG 1643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87399148845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5