BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg916271
Length=168
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 200 3e-51
AT3G32990.1 | Symbols: | pseudogene, ATP synthase C subunit, b... 178 1e-44
AT3G44210.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 178 1e-44
AT1G35790.1 | Symbols: | transposable element gene | chr1:1329... 75.0 2e-13
AT1G34315.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 63.9 4e-10
> AT3G43870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G44210.1);
Has 18 Blast hits to 18 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15728176-15729150
FORWARD LENGTH=564
Length=564
Score = 200 bits (108), Expect = 3e-51
Identities = 130/140 (93%), Gaps = 4/140 (3%)
Strand=Plus/Plus
Query 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTAACGAGCCCGGAATGGGAGTGTTT 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 370 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 429
Query 61 GAGCCACGACGGCCAGCCTCCACTCAA-GAGGTTCTAGTCATCACGAGGATGACTGGACC 119
||||||||| ||||||||||||| | | |||||||||||| |||||||||||||||||||
Sbjct 430 GAGCCACGAGGGCCAGCCTCCAC-CTATGAGGTTCTAGTCGTCACGAGGATGACTGGACC 488
Query 120 TAACGATGTATGTATGGTTA 139
||||||||| ||||| |||
Sbjct 489 TAACGATGT--GTATGTTTA 506
> AT3G32990.1 | Symbols: | pseudogene, ATP synthase C subunit,
blastp match of 86% identity and 9.3e-27 P-value to SP|P06286|ATPH_TOBAC
ATP synthase C chain (EC 3.6.3.14) (Lipid-binding
protein) (Subunit III). (Common tobacco) {Nicotiana tabacum}
| chr3:13534183-13536711 REVERSE LENGTH=2529
Length=2529
Score = 178 bits (96), Expect = 1e-44
Identities = 125/139 (90%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTAACGAGCCCGGAATGGGAGTGTTT 60
|||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
Sbjct 1947 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCAGAATATGAGTGTCT 2006
Query 61 GAGCCACGACGGCCAGCCTCCACTCAAGAGGTTCTAGTCATCACGAGGATGACTGGACCT 120
|||||| || |||||||||||||||| |||||||||||| ||||| |||||||| |||||
Sbjct 2007 GAGCCATGAGGGCCAGCCTCCACTCATGAGGTTCTAGTCGTCACGGGGATGACTTGACCT 2066
Query 121 AACGATGTATGTATGGTTA 139
|||||||| ||||| |||
Sbjct 2067 AACGATGT--GTATGTTTA 2083
> AT3G44210.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G43870.1);
Has 15 Blast hits to 15 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15916270-15917332
FORWARD LENGTH=432
Length=432
Score = 178 bits (96), Expect = 1e-44
Identities = 116/126 (92%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTAACGAGCCCGGAATGGGAGTGTTT 60
|||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
Sbjct 262 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACAAGCCCAGAATGGGAGTGTCT 321
Query 61 GAGCCACGACGGCCAGCCTCCACTCAAGAGGTTCTAGTCATCACGAGGATGACTGGACCT 120
||||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 322 GAGCCACGAGGGCCAGCCTCCACTTATGAGGTTCTAGTTGTCACGAGGATGACTGGACCT 381
Query 121 AACGAT 126
|||||
Sbjct 382 TACGAT 387
> AT1G35790.1 | Symbols: | transposable element gene | chr1:13295190-13300109
REVERSE LENGTH=4920
Length=4920
Score = 75.0 bits (40), Expect = 2e-13
Identities = 56/63 (89%), Gaps = 4/63 (6%)
Strand=Plus/Minus
Query 78 CTCCA-CTCAAGAGGTTCTAGTCATCACGAGGATGACTGGACCTAACGATGTATGTATGG 136
||||| || | |||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1352 CTCCACCT-ATGAGGTTCTAGTCGTCACGAGGATGACTGGACCTAACGATGT--GTATGT 1296
Query 137 TTA 139
|||
Sbjct 1295 TTA 1293
> AT1G34315.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G31400.1); Has
4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:12514106-12516521
REVERSE LENGTH=819
Length=819
Score = 63.9 bits (34), Expect = 4e-10
Identities = 45/50 (90%), Gaps = 2/50 (4%)
Strand=Plus/Plus
Query 90 GGTTCTAGTCATCACGAGGATGACTGGACCTAACGATGTATGTATGGTTA 139
||||||||| |||||||||||||||||||||||||||| ||||| |||
Sbjct 423 GGTTCTAGTTGTCACGAGGATGACTGGACCTAACGATGT--GTATGTTTA 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7293695895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5