BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg916271 Length=168 Score E Sequences producing significant alignments: (Bits) Value AT3G43870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 200 3e-51 AT3G32990.1 | Symbols: | pseudogene, ATP synthase C subunit, b... 178 1e-44 AT3G44210.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 178 1e-44 AT1G35790.1 | Symbols: | transposable element gene | chr1:1329... 75.0 2e-13 AT1G34315.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 63.9 4e-10 > AT3G43870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44210.1); Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15728176-15729150 FORWARD LENGTH=564 Length=564 Score = 200 bits (108), Expect = 3e-51 Identities = 130/140 (93%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTAACGAGCCCGGAATGGGAGTGTTT 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 370 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 429 Query 61 GAGCCACGACGGCCAGCCTCCACTCAA-GAGGTTCTAGTCATCACGAGGATGACTGGACC 119 ||||||||| ||||||||||||| | | |||||||||||| ||||||||||||||||||| Sbjct 430 GAGCCACGAGGGCCAGCCTCCAC-CTATGAGGTTCTAGTCGTCACGAGGATGACTGGACC 488 Query 120 TAACGATGTATGTATGGTTA 139 ||||||||| ||||| ||| Sbjct 489 TAACGATGT--GTATGTTTA 506 > AT3G32990.1 | Symbols: | pseudogene, ATP synthase C subunit, blastp match of 86% identity and 9.3e-27 P-value to SP|P06286|ATPH_TOBAC ATP synthase C chain (EC 3.6.3.14) (Lipid-binding protein) (Subunit III). (Common tobacco) {Nicotiana tabacum} | chr3:13534183-13536711 REVERSE LENGTH=2529 Length=2529 Score = 178 bits (96), Expect = 1e-44 Identities = 125/139 (90%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTAACGAGCCCGGAATGGGAGTGTTT 60 |||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| | Sbjct 1947 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCAGAATATGAGTGTCT 2006 Query 61 GAGCCACGACGGCCAGCCTCCACTCAAGAGGTTCTAGTCATCACGAGGATGACTGGACCT 120 |||||| || |||||||||||||||| |||||||||||| ||||| |||||||| ||||| Sbjct 2007 GAGCCATGAGGGCCAGCCTCCACTCATGAGGTTCTAGTCGTCACGGGGATGACTTGACCT 2066 Query 121 AACGATGTATGTATGGTTA 139 |||||||| ||||| ||| Sbjct 2067 AACGATGT--GTATGTTTA 2083 > AT3G44210.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43870.1); Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15916270-15917332 FORWARD LENGTH=432 Length=432 Score = 178 bits (96), Expect = 1e-44 Identities = 116/126 (92%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTAACGAGCCCGGAATGGGAGTGTTT 60 |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| | Sbjct 262 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACAAGCCCAGAATGGGAGTGTCT 321 Query 61 GAGCCACGACGGCCAGCCTCCACTCAAGAGGTTCTAGTCATCACGAGGATGACTGGACCT 120 ||||||||| |||||||||||||| | ||||||||||| |||||||||||||||||||| Sbjct 322 GAGCCACGAGGGCCAGCCTCCACTTATGAGGTTCTAGTTGTCACGAGGATGACTGGACCT 381 Query 121 AACGAT 126 ||||| Sbjct 382 TACGAT 387 > AT1G35790.1 | Symbols: | transposable element gene | chr1:13295190-13300109 REVERSE LENGTH=4920 Length=4920 Score = 75.0 bits (40), Expect = 2e-13 Identities = 56/63 (89%), Gaps = 4/63 (6%) Strand=Plus/Minus Query 78 CTCCA-CTCAAGAGGTTCTAGTCATCACGAGGATGACTGGACCTAACGATGTATGTATGG 136 ||||| || | |||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 1352 CTCCACCT-ATGAGGTTCTAGTCGTCACGAGGATGACTGGACCTAACGATGT--GTATGT 1296 Query 137 TTA 139 ||| Sbjct 1295 TTA 1293 > AT1G34315.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31400.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:12514106-12516521 REVERSE LENGTH=819 Length=819 Score = 63.9 bits (34), Expect = 4e-10 Identities = 45/50 (90%), Gaps = 2/50 (4%) Strand=Plus/Plus Query 90 GGTTCTAGTCATCACGAGGATGACTGGACCTAACGATGTATGTATGGTTA 139 ||||||||| |||||||||||||||||||||||||||| ||||| ||| Sbjct 423 GGTTCTAGTTGTCACGAGGATGACTGGACCTAACGATGT--GTATGTTTA 470 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7293695895 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5