BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg916283

Length=219
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G33187.1 | Symbols:  | Defensin-like (DEFL) family protein |...   311    2e-84
  AT5G28950.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   108    3e-23


> AT3G33187.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr3:14020687-14021392 REVERSE LENGTH=267
Length=267

 Score =  311 bits (168),  Expect = 2e-84
 Identities = 194/207 (94%), Gaps = 0/207 (0%)
 Strand=Plus/Plus

Query  1    ATGTACGTACCTTCTGGAACTGGTAGTCGATTACTGTTCCTTGTCAAAGCATCATTTAAT  60
            |||||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGTACTTATCTTCTAGAACTGGTAGTCGATTACTGTTCCTTGTGAAAGCATCATTTAAT  60

Query  61   ACTTTTGAAAAAGTTGCAACCATTTCTTCAACACTAATATATTTTGTATCGCATAAACTT  120
            |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  61   ACTTTTGAGAAAGTTGCAACCATTTCTTCAACACTAATATATTTCGTATCGCATAAACTT  120

Query  121  GTCTGCTCCCGGAGTTCTTTACATAACTTAAGAAATATTTGTGGATACATTCGATACAAC  180
            ||| |||||||||||| || ||||||||| ||||||||||||||||| |||||| |||||
Sbjct  121  GTCAGCTCCCGGAGTTGTTCACATAACTTCAGAAATATTTGTGGATATATTCGACACAAC  180

Query  181  TGTCGAAAATGCATAGGGTTTTGCTTT  207
            ||||||||||||||| |||||||||||
Sbjct  181  TGTCGAAAATGCATAAGGTTTTGCTTT  207


> AT5G28950.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G41980.1); 
Has 448 Blast hits to 446 proteins in 74 species: Archae - 
0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:10992505-10993435 
FORWARD LENGTH=447
Length=447

 Score =  108 bits (58),  Expect = 3e-23
 Identities = 58/58 (100%), Gaps = 0/58 (0%)
 Strand=Plus/Minus

Query  11   CTTCTGGAACTGGTAGTCGATTACTGTTCCTTGTCAAAGCATCATTTAATACTTTTGA  68
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  CTTCTGGAACTGGTAGTCGATTACTGTTCCTTGTCAAAGCATCATTTAATACTTTTGA  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9802211055


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5